Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WE348_RS00905 Genome accession   NZ_CP147978
Coordinates   202397..202981 (+) Length   194 a.a.
NCBI ID   WP_039217393.1    Uniprot ID   A0A0B3YFD5
Organism   Alteromonas macleodii strain KD01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 197397..207981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WE348_RS00890 (WE348_00890) - 198022..199077 (+) 1056 WP_014947878.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  WE348_RS00895 (WE348_00895) galK 199070..200209 (+) 1140 WP_039217399.1 galactokinase -
  WE348_RS00900 (WE348_00900) - 200567..202129 (+) 1563 WP_014975374.1 sodium/sugar symporter -
  WE348_RS00905 (WE348_00905) ssb 202397..202981 (+) 585 WP_039217393.1 single-stranded DNA-binding protein Machinery gene
  WE348_RS00910 (WE348_00910) - 203190..204143 (+) 954 WP_283622948.1 hypothetical protein -
  WE348_RS00915 (WE348_00915) - 204323..205609 (+) 1287 WP_338852822.1 dienelactone hydrolase family protein -
  WE348_RS00920 (WE348_00920) - 205688..207817 (-) 2130 WP_338852823.1 alpha-galactosidase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21156.05 Da        Isoelectric Point: 4.9658

>NTDB_id=949802 WE348_RS00905 WP_039217393.1 202397..202981(+) (ssb) [Alteromonas macleodii strain KD01]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDRYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAQGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=949802 WE348_RS00905 WP_039217393.1 202397..202981(+) (ssb) [Alteromonas macleodii strain KD01]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAGACGCGTAAGTGGCAAGATCAACAAGGCCAAGATAGATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGTGGTCGCGGTGGTGAAGGTGGCGGCGGTAACGGTGGTTACCAACGTCCTCAAAACAACCAAGGTGGTTACA
ATCAAGCTCCAGCGCAGGGCGGCTATAACCAAGCGCCACAGCAAGGTGGTGGTCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGTGGCTACAATCAAGCGCCTCAGGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGATGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B3YFD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56.5

100

0.582
  ssb Vibrio cholerae strain A1552

55

100

0.567
  ssb Neisseria meningitidis MC58

46.875

98.969

0.464
  ssb Neisseria gonorrhoeae MS11

46.875

98.969

0.464