Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WA016_RS12025 Genome accession   NZ_CP147913
Coordinates   3119562..3120071 (-) Length   169 a.a.
NCBI ID   WP_338870391.1    Uniprot ID   -
Organism   Myxococcus stipitatus strain KYC2006     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3114562..3125071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WA016_RS12005 (WA016_02433) - 3115491..3116237 (-) 747 WP_338870383.1 phosphoribosyltransferase -
  WA016_RS12010 (WA016_02434) - 3116368..3117399 (-) 1032 WP_338870385.1 Glu/Leu/Phe/Val dehydrogenase dimerization domain-containing protein -
  WA016_RS12015 (WA016_02435) - 3117434..3118324 (-) 891 WP_338870387.1 Hsp33 family molecular chaperone HslO -
  WA016_RS12020 (WA016_02436) - 3118580..3119257 (+) 678 WP_338870389.1 succinate dehydrogenase -
  WA016_RS12025 (WA016_02437) ssb 3119562..3120071 (-) 510 WP_338870391.1 single-stranded DNA-binding protein Machinery gene
  WA016_RS12030 (WA016_02438) dacB 3120296..3122572 (-) 2277 WP_338870393.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  WA016_RS12035 (WA016_02439) dtd 3122798..3123259 (+) 462 WP_338870395.1 D-aminoacyl-tRNA deacylase -
  WA016_RS12040 (WA016_02440) - 3123256..3124101 (-) 846 WP_338870397.1 hypothetical protein -
  WA016_RS12045 (WA016_02441) - 3124125..3124586 (-) 462 WP_338870399.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 17995.79 Da        Isoelectric Point: 5.3106

>NTDB_id=949671 WA016_RS12025 WP_338870391.1 3119562..3120071(-) (ssb) [Myxococcus stipitatus strain KYC2006]
MAGGVNKVILIGNLGADPEVRFTPGGQAVANFRIATSESWNDKNGQKQERTEWHRIVVWGKLAELCGEYLKKGRQCYVEG
RLQTREWTDKENRKNYTTEVVANAVTFLGGRDAGDGMGGGGGGGGGRRQFGGQQQRGGMDNDYGQPPPMDDGMGGGGGGG
GNNDEDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=949671 WA016_RS12025 WP_338870391.1 3119562..3120071(-) (ssb) [Myxococcus stipitatus strain KYC2006]
ATGGCAGGTGGCGTGAACAAGGTCATCCTCATCGGCAACCTGGGGGCGGATCCCGAAGTGCGATTCACCCCGGGCGGCCA
GGCGGTGGCGAACTTCCGCATCGCCACGAGCGAGAGCTGGAACGACAAGAACGGCCAGAAGCAGGAGCGCACGGAGTGGC
ACCGCATCGTCGTCTGGGGAAAGCTCGCGGAGCTCTGCGGCGAGTACCTGAAGAAGGGACGGCAGTGCTACGTCGAGGGG
CGCCTGCAGACTCGCGAGTGGACCGACAAGGAGAACCGGAAGAACTACACCACTGAAGTCGTCGCCAACGCGGTGACGTT
CCTGGGCGGCCGTGACGCCGGGGACGGCATGGGCGGCGGGGGTGGTGGTGGCGGTGGTCGCCGGCAATTCGGTGGCCAGC
AGCAGCGCGGCGGCATGGACAACGACTACGGTCAGCCGCCCCCCATGGATGACGGCATGGGCGGTGGTGGCGGTGGCGGC
GGCAACAACGACGAAGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.568

100

0.521
  ssb Neisseria meningitidis MC58

43.353

100

0.444
  ssb Glaesserella parasuis strain SC1401

41.899

100

0.444
  ssb Neisseria gonorrhoeae MS11

54.867

66.864

0.367