Detailed information    

insolico Bioinformatically predicted

Overview

Name   comW   Type   Regulator
Locus tag   AAA982_RS00115 Genome accession   NZ_AP028601
Coordinates   21812..22048 (+) Length   78 a.a.
NCBI ID   WP_000939546.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF1     
Function   stabilization and activation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 16812..27048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAA982_RS00105 (TKY113292_00150) - 20224..20620 (+) 397 Protein_14 IS630 family transposase -
  AAA982_RS00110 - 20749..21546 (-) 798 Protein_15 transposase -
  AAA982_RS00115 (TKY113292_00170) comW 21812..22048 (+) 237 WP_000939546.1 sigma(X)-activator ComW Regulator
  AAA982_RS00120 (TKY113292_00180) - 22279..23565 (+) 1287 WP_000205044.1 adenylosuccinate synthase -
  AAA982_RS00125 (TKY113292_00190) - 23829..24977 (-) 1149 WP_000876727.1 site-specific integrase -
  AAA982_RS00130 (TKY113292_00200) - 25148..25948 (-) 801 WP_000539947.1 HIRAN domain-containing protein -
  AAA982_RS00135 (TKY113292_00210) - 26075..26830 (-) 756 WP_000069476.1 XRE family transcriptional regulator -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 9686.14 Da        Isoelectric Point: 6.7051

>NTDB_id=94957 AAA982_RS00115 WP_000939546.1 21812..22048(+) (comW) [Streptococcus pneumoniae strain PF1]
MLQKIYEQMANFYDSIEEEYGPTFGDNFDWEHVHFKFLIYYLVRYGIGCRRDFIVYHYRVAYRLYLEKLVMNRGFISC

Nucleotide


Download         Length: 237 bp        

>NTDB_id=94957 AAA982_RS00115 WP_000939546.1 21812..22048(+) (comW) [Streptococcus pneumoniae strain PF1]
ATGTTACAAAAAATTTATGAGCAGATGGCTAATTTCTATGATAGTATTGAAGAAGAGTATGGTCCTACATTTGGTGATAA
TTTTGACTGGGAACATGTTCATTTTAAATTTTTAATTTATTATTTAGTGAGATATGGCATTGGTTGTCGTAGGGATTTTA
TCGTTTACCATTATCGTGTTGCTTATCGTTTGTATCTTGAAAAATTGGTAATGAATCGGGGGTTTATTTCTTGTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comW Streptococcus pneumoniae Rx1

98.718

100

0.987
  comW Streptococcus pneumoniae D39

98.718

100

0.987
  comW Streptococcus pneumoniae R6

98.718

100

0.987
  comW Streptococcus pneumoniae TIGR4

98.718

100

0.987
  comW Streptococcus mitis SK321

76.923

100

0.769
  comW Streptococcus mitis NCTC 12261

76.623

98.718

0.756