Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WFE12_RS22080 Genome accession   NZ_CP147877
Coordinates   4200298..4200816 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4195298..4205816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WFE12_RS22050 yyaJ 4195801..4197156 (+) 1356 WP_003243011.1 MFS transporter -
  WFE12_RS22055 maa 4197190..4197744 (-) 555 WP_003242928.1 sugar O-acetyltransferase -
  WFE12_RS22060 yyaH 4197762..4198142 (-) 381 WP_003244460.1 VOC family protein -
  WFE12_RS22065 ccpB 4198198..4199133 (-) 936 WP_003243573.1 transcriptional regulator CcpB -
  WFE12_RS22070 xth 4199192..4199950 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  WFE12_RS22075 rpsR 4200015..4200254 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  WFE12_RS22080 ssbA 4200298..4200816 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  WFE12_RS22085 rpsF 4200857..4201144 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  WFE12_RS22090 ychF 4201255..4202355 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  WFE12_RS22095 yyaE 4202482..4204485 (-) 2004 WP_003244290.1 molybdopterin-dependent oxidoreductase -
  WFE12_RS22100 yyzM 4204536..4204742 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=949185 WFE12_RS22080 WP_003219228.1 4200298..4200816(-) (ssbA) [Bacillus subtilis subsp. subtilis str. 168]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=949185 WFE12_RS22080 WP_003219228.1 4200298..4200816(-) (ssbA) [Bacillus subtilis subsp. subtilis str. 168]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378