Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACG3JK_RS08330 Genome accession   NZ_CP171738
Coordinates   1618371..1618964 (+) Length   197 a.a.
NCBI ID   WP_003107862.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1613371..1623964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JK_RS08315 (ACG3JK_08315) - 1613917..1615062 (+) 1146 WP_045407338.1 site-specific integrase -
  ACG3JK_RS08320 (ACG3JK_08320) hexB 1615159..1617135 (+) 1977 WP_041828658.1 DNA mismatch repair endonuclease MutL Machinery gene
  ACG3JK_RS08325 (ACG3JK_08325) - 1617146..1618369 (+) 1224 WP_003103803.1 MFS transporter -
  ACG3JK_RS08330 (ACG3JK_08330) ruvA 1618371..1618964 (+) 594 WP_003107862.1 Holliday junction branch migration protein RuvA Machinery gene
  ACG3JK_RS08335 (ACG3JK_08335) - 1618968..1619519 (+) 552 WP_096633379.1 DNA-3-methyladenine glycosylase I -
  ACG3JK_RS08340 (ACG3JK_08340) cinA 1619908..1621179 (+) 1272 WP_003103228.1 competence/damage-inducible protein A Machinery gene
  ACG3JK_RS08345 (ACG3JK_08345) recA 1621259..1622398 (+) 1140 WP_003102546.1 recombinase RecA Machinery gene
  ACG3JK_RS08350 (ACG3JK_08350) spx 1622752..1623150 (+) 399 WP_003104943.1 transcriptional regulator Spx -
  ACG3JK_RS08355 (ACG3JK_08355) - 1623264..1623533 (+) 270 WP_003104158.1 IreB family regulatory phosphoprotein -
  ACG3JK_RS08360 (ACG3JK_08360) ruvX 1623530..1623949 (+) 420 WP_003105581.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21778.23 Da        Isoelectric Point: 5.0776

>NTDB_id=949063 ACG3JK_RS08330 WP_003107862.1 1618371..1618964(+) (ruvA) [Streptococcus parauberis strain DB-M23]
MFDYIKGQLTKITAKYIVVEANGLGYIIYVANPYSFSDSVNQQVTIYLHQVIREDAHLLFGFHTEEEKDVFLKLISVSGI
GPMTALAIVAVDDNEGLVMAIDNSDIKYLMKFPKIGKKTAQQMILDLAGKFVEEPKDSAPTSKANAGGNLQLDEAIEALL
ALGYKATELKKIRAFFEGTDETAEQYIKSALKMLMKG

Nucleotide


Download         Length: 594 bp        

>NTDB_id=949063 ACG3JK_RS08330 WP_003107862.1 1618371..1618964(+) (ruvA) [Streptococcus parauberis strain DB-M23]
ATGTTTGATTATATAAAAGGTCAATTAACTAAAATTACTGCTAAATATATTGTGGTCGAAGCTAATGGTTTAGGCTATAT
TATCTATGTTGCTAATCCTTATAGTTTTTCTGACAGTGTCAATCAACAGGTCACTATTTATTTACACCAAGTTATTCGTG
AGGACGCTCACCTCTTATTTGGTTTTCATACAGAAGAGGAAAAAGATGTCTTCTTGAAACTCATCTCAGTTTCTGGAATT
GGTCCTATGACTGCGCTTGCGATTGTCGCCGTCGACGATAATGAAGGCTTAGTCATGGCCATTGACAACAGTGATATCAA
GTACTTAATGAAATTCCCTAAAATTGGTAAGAAAACAGCTCAGCAAATGATTTTAGACTTAGCTGGTAAGTTTGTTGAGG
AACCTAAAGATAGTGCCCCAACAAGTAAAGCAAACGCGGGTGGCAATCTACAACTTGATGAAGCTATTGAAGCACTACTT
GCACTGGGCTACAAAGCAACAGAATTGAAGAAAATTCGAGCTTTCTTTGAAGGAACAGATGAAACAGCTGAGCAGTATAT
TAAATCAGCTCTTAAAATGTTGATGAAAGGTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

66.162

100

0.665
  ruvA Streptococcus pneumoniae D39

66.162

100

0.665
  ruvA Streptococcus pneumoniae TIGR4

65.99

100

0.66
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.063

100

0.431