Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   ACG3JK_RS08320 Genome accession   NZ_CP171738
Coordinates   1615159..1617135 (+) Length   658 a.a.
NCBI ID   WP_041828658.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M23     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1610159..1622135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JK_RS08285 (ACG3JK_08285) - 1611187..1611705 (-) 519 WP_394714021.1 hypothetical protein -
  ACG3JK_RS08290 (ACG3JK_08290) - 1611715..1611987 (-) 273 WP_041828666.1 hypothetical protein -
  ACG3JK_RS08295 (ACG3JK_08295) - 1612000..1612233 (-) 234 WP_041828664.1 hypothetical protein -
  ACG3JK_RS08300 (ACG3JK_08300) - 1612221..1612454 (-) 234 WP_041828663.1 hypothetical protein -
  ACG3JK_RS08305 (ACG3JK_08305) - 1612668..1612853 (-) 186 WP_041828660.1 hypothetical protein -
  ACG3JK_RS08310 (ACG3JK_08310) - 1613008..1613835 (+) 828 WP_013794507.1 helix-turn-helix domain-containing protein -
  ACG3JK_RS08315 (ACG3JK_08315) - 1613917..1615062 (+) 1146 WP_045407338.1 site-specific integrase -
  ACG3JK_RS08320 (ACG3JK_08320) hexB 1615159..1617135 (+) 1977 WP_041828658.1 DNA mismatch repair endonuclease MutL Machinery gene
  ACG3JK_RS08325 (ACG3JK_08325) - 1617146..1618369 (+) 1224 WP_003103803.1 MFS transporter -
  ACG3JK_RS08330 (ACG3JK_08330) ruvA 1618371..1618964 (+) 594 WP_003107862.1 Holliday junction branch migration protein RuvA Machinery gene
  ACG3JK_RS08335 (ACG3JK_08335) - 1618968..1619519 (+) 552 WP_096633379.1 DNA-3-methyladenine glycosylase I -
  ACG3JK_RS08340 (ACG3JK_08340) cinA 1619908..1621179 (+) 1272 WP_003103228.1 competence/damage-inducible protein A Machinery gene

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 73944.27 Da        Isoelectric Point: 5.1374

>NTDB_id=949062 ACG3JK_RS08320 WP_041828658.1 1615159..1617135(+) (hexB) [Streptococcus parauberis strain DB-M23]
MQKIVELPEVLANQIAAGEVIERPASVVKELVENAIDAKSSQITIEIEESGLKSITITDNGDGMSKEDLPLSLLRHATSK
IKNQSDLFRIRTLGFRGEALPSIASISLLTIKSATAEADYGNQLISKGGEVESIEPVSTPVGTKIKVENLFFNTPARLKY
MKSLQAELAHIVDVVNRLSLAHPEVAFTLICDGRELTKTSGTADLKQAIAGIYGINTAKKMVEISTADLDFEVSGFVSLP
ELTRANRNYITILINGRYIKNFLLNRAILDGYGSKLMVGRFPIVVIDIQIDPYLADVNVHPTKQEVRISKERELMSLISS
AISESLRLQDLIPDALENLAKSTTRNNNKFEQTSLPLQANKIYYDKEKGDFFTVDNRKEEPSNQPGQSNIVDSGVKIGDQ
VQPLVEETSPTFSVKHASRTISDVDDANHPDLDLSNQKKLTKLIENLENEETSVFPELDYFGQMHGTYLFAQGNGGLFII
DQHAAQERVKYEYYREKIGQVDNSLQQLLVPYLFEFSGSDFINLQEKMDLLNQVGIYLEEYGQNTFILREHPIWMKENEI
ESGVYEMCDMLLLTNNVSIKTYRAELAIMMSCKRSIKANHSLDDYSARQLLLQLAQCKNPYNCPHGRPVLINFSKADMEK
MFRRIQENHTSLRDLGKY

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=949062 ACG3JK_RS08320 WP_041828658.1 1615159..1617135(+) (hexB) [Streptococcus parauberis strain DB-M23]
ATGCAAAAGATTGTAGAATTACCAGAGGTTCTCGCCAATCAGATCGCGGCTGGTGAAGTTATTGAACGGCCAGCAAGTGT
TGTGAAAGAATTGGTCGAGAATGCTATTGATGCCAAAAGCAGTCAAATTACAATTGAGATTGAAGAATCAGGGCTTAAAT
CAATTACTATAACTGATAATGGGGATGGGATGTCAAAAGAAGACTTACCCCTTAGTTTGTTACGTCATGCAACCAGTAAG
ATAAAAAATCAAAGTGATCTTTTCAGAATTAGAACTTTGGGTTTCCGTGGTGAGGCTTTACCTTCAATTGCTTCTATCAG
TTTACTGACAATTAAATCAGCAACAGCTGAAGCAGACTATGGCAATCAACTAATCTCCAAGGGTGGAGAAGTTGAATCAA
TTGAACCAGTCTCAACGCCAGTTGGAACAAAGATAAAAGTTGAAAATCTCTTTTTCAACACGCCTGCTCGTTTAAAATAC
ATGAAGAGTCTGCAAGCTGAGCTTGCGCATATTGTCGATGTGGTCAATCGTCTTAGCTTAGCTCATCCAGAAGTAGCCTT
TACATTGATTTGTGATGGAAGGGAGTTAACTAAGACCTCAGGAACTGCTGATTTAAAACAAGCTATTGCAGGTATCTATG
GTATTAACACTGCGAAGAAAATGGTCGAGATTTCAACGGCAGATTTAGACTTTGAGGTTTCAGGCTTTGTTAGTTTACCC
GAATTAACAAGGGCAAATCGAAATTACATAACTATTTTAATCAATGGGCGTTATATCAAAAACTTTCTCTTGAACAGGGC
TATTTTAGATGGTTATGGATCAAAATTAATGGTTGGACGCTTTCCAATTGTCGTTATTGATATTCAAATCGATCCTTATT
TAGCTGATGTAAACGTCCACCCAACTAAACAGGAAGTGCGGATTTCAAAAGAACGTGAATTAATGAGTTTAATTAGTTCA
GCAATTTCAGAGAGTCTCCGTTTACAGGATTTGATTCCTGATGCCTTGGAAAATTTAGCCAAGTCAACGACAAGAAACAA
TAATAAATTTGAACAAACAAGTCTACCTTTACAAGCCAATAAAATTTACTATGATAAAGAAAAAGGTGATTTCTTTACAG
TTGATAATAGAAAAGAAGAGCCCTCTAACCAACCTGGTCAAAGTAATATAGTTGACAGCGGTGTAAAGATAGGTGACCAG
GTACAGCCTTTAGTTGAAGAGACAAGTCCAACATTCTCTGTCAAGCATGCTAGTCGCACGATAAGTGATGTGGATGATGC
CAATCATCCAGATTTGGATTTATCTAATCAGAAAAAATTAACAAAACTGATTGAAAATTTAGAGAACGAAGAAACTTCGG
TTTTCCCAGAGTTAGATTACTTTGGGCAAATGCATGGAACATATCTCTTTGCTCAGGGGAATGGTGGATTGTTTATCATT
GATCAACACGCTGCTCAAGAGCGTGTTAAATATGAGTATTATCGAGAAAAAATTGGTCAGGTCGACAATAGTTTGCAACA
ATTATTAGTTCCCTATCTCTTTGAATTTTCTGGGTCAGATTTTATTAATCTGCAAGAAAAGATGGATTTACTAAATCAAG
TTGGCATTTATCTAGAAGAATATGGACAAAATACCTTCATTCTCCGCGAACATCCAATTTGGATGAAGGAAAATGAAATT
GAATCTGGTGTCTATGAAATGTGTGATATGCTTTTGTTGACAAATAATGTGTCCATTAAAACTTATCGTGCAGAGTTAGC
CATCATGATGAGCTGTAAACGATCAATTAAAGCAAATCATAGTCTAGATGACTATTCAGCACGGCAATTACTATTGCAAC
TGGCACAATGTAAAAATCCATATAACTGTCCACATGGGCGACCTGTCTTGATTAATTTTAGTAAAGCGGATATGGAAAAA
ATGTTCCGACGGATACAAGAAAATCATACTAGCTTGAGAGATTTAGGAAAATATTAG

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-120)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-326)

MutL C terminal dimerisation domain (MutL_C)

(460-602)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

68.271

100

0.69