Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | UXR38_RS01825 | Genome accession | NZ_CP147872 |
| Coordinates | 411274..411777 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain BSN131 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 407214..433036 | 411274..411777 | within | 0 |
Gene organization within MGE regions
Location: 407214..433036
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UXR38_RS01795 (UXR38_01795) | - | 407214..408059 (+) | 846 | WP_001557587.1 | ParB/RepB/Spo0J family partition protein | - |
| UXR38_RS01800 (UXR38_01800) | - | 408213..409094 (+) | 882 | WP_000373073.1 | mechanosensitive ion channel family protein | - |
| UXR38_RS01805 (UXR38_01805) | - | 409124..409327 (+) | 204 | WP_000157348.1 | DUF951 domain-containing protein | - |
| UXR38_RS01810 (UXR38_01810) | ychF | 409339..410436 (+) | 1098 | WP_001218732.1 | redox-regulated ATPase YchF | - |
| UXR38_RS01815 (UXR38_01815) | - | 410522..410713 (-) | 192 | WP_001052484.1 | hypothetical protein | - |
| UXR38_RS01820 (UXR38_01820) | rpsF | 410957..411253 (+) | 297 | WP_001261460.1 | 30S ribosomal protein S6 | - |
| UXR38_RS01825 (UXR38_01825) | ssbA | 411274..411777 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| UXR38_RS01830 (UXR38_01830) | rpsR | 411829..412071 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| UXR38_RS01835 (UXR38_01835) | - | 412310..413209 (-) | 900 | WP_001797289.1 | Abi family protein | - |
| UXR38_RS01840 (UXR38_01840) | - | 413211..414425 (-) | 1215 | WP_000270134.1 | site-specific integrase | - |
| UXR38_RS01845 (UXR38_01845) | - | 414881..415576 (-) | 696 | WP_000668212.1 | helix-turn-helix domain-containing protein | - |
| UXR38_RS01850 (UXR38_01850) | - | 415720..415932 (+) | 213 | WP_000794656.1 | helix-turn-helix transcriptional regulator | - |
| UXR38_RS01855 (UXR38_01855) | - | 415933..416205 (+) | 273 | WP_000091734.1 | helix-turn-helix domain-containing protein | - |
| UXR38_RS01860 (UXR38_01860) | - | 416217..416363 (+) | 147 | WP_031824147.1 | hypothetical protein | - |
| UXR38_RS01865 (UXR38_01865) | tscA | 416356..416565 (+) | 210 | WP_001058486.1 | type II toxin-antitoxin system antitoxin TscA | - |
| UXR38_RS01870 (UXR38_01870) | tscT | 416568..416885 (+) | 318 | WP_001103938.1 | type II toxin-antitoxin system toxin TscT | - |
| UXR38_RS01875 (UXR38_01875) | - | 416937..418550 (+) | 1614 | WP_000344763.1 | hypothetical protein | - |
| UXR38_RS01880 (UXR38_01880) | - | 418721..419524 (+) | 804 | WP_000148371.1 | bifunctional DNA primase/polymerase | - |
| UXR38_RS01885 (UXR38_01885) | - | 419511..419783 (+) | 273 | WP_336469764.1 | pathogenicity island protein | - |
| UXR38_RS01890 (UXR38_01890) | - | 419785..420426 (+) | 642 | WP_001019289.1 | hypothetical protein | - |
| UXR38_RS01895 (UXR38_01895) | - | 420774..421115 (+) | 342 | WP_001190615.1 | hypothetical protein | - |
| UXR38_RS01900 (UXR38_01900) | - | 421127..421705 (+) | 579 | WP_000846283.1 | hypothetical protein | - |
| UXR38_RS01905 (UXR38_01905) | - | 421723..421941 (+) | 219 | WP_000448772.1 | capsid morphogenesis B protein | - |
| UXR38_RS01910 (UXR38_01910) | - | 421992..422519 (+) | 528 | WP_000771368.1 | spore coat protein | - |
| UXR38_RS01915 (UXR38_01915) | - | 422522..422863 (+) | 342 | WP_000358778.1 | hypothetical protein | - |
| UXR38_RS01920 (UXR38_01920) | - | 422860..423429 (+) | 570 | WP_001293075.1 | terminase small subunit | - |
| UXR38_RS01925 (UXR38_01925) | - | 423886..424377 (+) | 492 | WP_000770704.1 | hypothetical protein | - |
| UXR38_RS01930 (UXR38_01930) | - | 424364..424993 (+) | 630 | WP_000742266.1 | hypothetical protein | - |
| UXR38_RS01935 (UXR38_01935) | - | 424998..425939 (+) | 942 | WP_000323493.1 | hypothetical protein | - |
| UXR38_RS01940 (UXR38_01940) | - | 426135..426266 (+) | 132 | WP_000247644.1 | hypothetical protein | - |
| UXR38_RS01945 (UXR38_01945) | - | 426413..426511 (+) | 99 | Protein_387 | hypothetical protein | - |
| UXR38_RS01950 (UXR38_01950) | - | 426772..426924 (+) | 153 | WP_001788502.1 | hypothetical protein | - |
| UXR38_RS01955 (UXR38_01955) | - | 426995..427105 (+) | 111 | WP_000139423.1 | hypothetical protein | - |
| UXR38_RS01960 (UXR38_01960) | - | 427107..427292 (+) | 186 | WP_001286805.1 | hypothetical protein | - |
| UXR38_RS01965 (UXR38_01965) | - | 428088..429026 (-) | 939 | WP_001817700.1 | Abi family protein | - |
| UXR38_RS01970 (UXR38_01970) | - | 429065..429778 (-) | 714 | Protein_392 | tyrosine-type recombinase/integrase | - |
| UXR38_RS01975 (UXR38_01975) | selX | 429984..430595 (+) | 612 | WP_336469765.1 | staphylococcal enterotoxin-like toxin X | - |
| UXR38_RS01980 (UXR38_01980) | - | 430964..431332 (+) | 369 | WP_000849163.1 | YxeA family protein | - |
| UXR38_RS01985 (UXR38_01985) | - | 431513..432085 (+) | 573 | WP_000769722.1 | PepSY domain-containing protein | - |
| UXR38_RS01990 (UXR38_01990) | - | 432222..432485 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| UXR38_RS01995 (UXR38_01995) | - | 432785..433036 (+) | 252 | WP_000466748.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=949061 UXR38_RS01825 WP_000934799.1 411274..411777(+) (ssbA) [Staphylococcus aureus strain BSN131]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=949061 UXR38_RS01825 WP_000934799.1 411274..411777(+) (ssbA) [Staphylococcus aureus strain BSN131]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |