Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACG3JM_RS04840 Genome accession   NZ_CP171735
Coordinates   957782..958717 (-) Length   311 a.a.
NCBI ID   WP_013794134.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 952782..963717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JM_RS04820 (ACG3JM_04820) - 953106..953756 (-) 651 WP_003108204.1 HAD family hydrolase -
  ACG3JM_RS04825 (ACG3JM_04825) - 953770..955011 (-) 1242 WP_003107259.1 OFA family MFS transporter -
  ACG3JM_RS04830 (ACG3JM_04830) - 955145..955783 (-) 639 WP_003107261.1 HAD family phosphatase -
  ACG3JM_RS04835 (ACG3JM_04835) pepF 955954..957756 (-) 1803 WP_013794133.1 oligoendopeptidase F Regulator
  ACG3JM_RS04840 (ACG3JM_04840) coiA 957782..958717 (-) 936 WP_013794134.1 competence protein CoiA Machinery gene
  ACG3JM_RS04845 (ACG3JM_04845) - 958788..959933 (-) 1146 WP_003102523.1 MFS transporter -
  ACG3JM_RS04850 (ACG3JM_04850) - 960033..960749 (-) 717 WP_003107266.1 pseudouridine synthase -
  ACG3JM_RS04855 (ACG3JM_04855) nagB 960827..961531 (-) 705 WP_013794136.1 glucosamine-6-phosphate deaminase -
  ACG3JM_RS04860 (ACG3JM_04860) queA 961723..962751 (+) 1029 WP_045407077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 311 a.a.        Molecular weight: 36547.65 Da        Isoelectric Point: 8.7613

>NTDB_id=948736 ACG3JM_RS04840 WP_013794134.1 957782..958717(-) (coiA) [Streptococcus parauberis strain DB-M11]
MLVAIDDLGNRLTTLDNLPKTGIYYCPVCKGQVTLKRGKVKQAHFAHKNLLNCPNSSLNESTEHLLLKAKLYQNLKKSEE
VTIETFFPSINQIADLQVNHKLVLEVQCSSLPPDRLVERTKNYRDNDQYIIWLLGKNLWIKHKLSYLQKQFLSFSWSIGF
YLWEIDLEKNCLRLCYMIHEDLMGKVTCLTRTCPLDGNLMSFFRMPFQKMNLEPIKVKSDSQLLQKIQKALKYRNKYWML
RQEKAYQMGINLLCLSVEDFYPQYNPPKCEQGFCLIESDLKPFYDAFEAYNKEISNKDVQTLHPPSFYVKI

Nucleotide


Download         Length: 936 bp        

>NTDB_id=948736 ACG3JM_RS04840 WP_013794134.1 957782..958717(-) (coiA) [Streptococcus parauberis strain DB-M11]
ATGTTAGTTGCAATTGATGATTTGGGGAATCGGCTCACCACCTTAGATAATTTACCCAAAACAGGTATCTATTACTGTCC
AGTATGTAAAGGTCAAGTCACTTTAAAGAGAGGAAAAGTGAAACAAGCACATTTTGCTCATAAGAATTTATTAAATTGTC
CTAACAGCTCACTTAACGAATCAACGGAACATTTATTACTCAAGGCTAAACTCTACCAGAATCTTAAAAAGAGTGAAGAA
GTGACGATTGAAACCTTTTTTCCAAGTATAAATCAAATTGCTGATTTACAAGTCAATCATAAATTAGTATTAGAAGTCCA
GTGTAGTTCATTACCTCCAGATAGATTAGTGGAACGAACAAAAAATTATAGAGACAATGATCAATACATTATCTGGTTAT
TAGGTAAGAATCTATGGATAAAGCATAAATTAAGTTATCTTCAAAAACAATTCTTATCATTTTCTTGGTCGATAGGCTTC
TATCTCTGGGAAATTGATCTAGAAAAAAATTGCCTAAGACTCTGCTATATGATTCATGAGGATTTAATGGGGAAGGTAAC
TTGTTTAACTAGAACTTGTCCTCTGGATGGGAACCTTATGTCATTTTTTAGAATGCCATTTCAAAAAATGAATCTAGAAC
CTATCAAGGTAAAAAGCGATAGCCAACTTCTGCAAAAAATTCAAAAAGCTTTGAAATATCGGAATAAGTATTGGATGCTT
AGGCAGGAAAAAGCCTATCAAATGGGAATTAATCTTTTATGTTTGTCGGTTGAGGATTTTTATCCGCAATATAATCCACC
TAAGTGTGAGCAAGGATTCTGTTTAATTGAGTCGGATTTAAAACCTTTTTATGATGCATTTGAGGCATATAATAAAGAAA
TTTCTAATAAAGACGTGCAAACGCTTCACCCTCCTAGCTTTTATGTTAAAATATGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(22-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

43.366

99.357

0.431
  coiA Streptococcus pneumoniae TIGR4

40.129

99.357

0.399
  coiA Streptococcus pneumoniae Rx1

40.129

99.357

0.399
  coiA Streptococcus pneumoniae D39

40.129

99.357

0.399
  coiA Streptococcus pneumoniae R6

40.129

99.357

0.399
  coiA Lactococcus lactis subsp. cremoris KW2

36.957

100

0.383