Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACG3JI_RS05790 Genome accession   NZ_CP171734
Coordinates   1155361..1156032 (-) Length   223 a.a.
NCBI ID   WP_045407616.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1150361..1161032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JI_RS05785 (ACG3JI_05785) hpf 1154738..1155286 (-) 549 WP_003105371.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACG3JI_RS05790 (ACG3JI_05790) comFC/cflB 1155361..1156032 (-) 672 WP_045407616.1 phosphoribosyltransferase family protein Machinery gene
  ACG3JI_RS05795 (ACG3JI_05795) comFA/cflA 1156022..1157326 (-) 1305 WP_045407612.1 DEAD/DEAH box helicase Machinery gene
  ACG3JI_RS05800 (ACG3JI_05800) - 1157383..1158015 (+) 633 WP_003107489.1 YigZ family protein -
  ACG3JI_RS05805 (ACG3JI_05805) cysK 1158138..1159067 (+) 930 WP_003103108.1 cysteine synthase A -
  ACG3JI_RS05810 (ACG3JI_05810) - 1159143..1159496 (-) 354 WP_003103672.1 S1 RNA-binding domain-containing protein -
  ACG3JI_RS05815 (ACG3JI_05815) - 1159496..1160896 (-) 1401 WP_045407608.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25857.11 Da        Isoelectric Point: 8.7227

>NTDB_id=948644 ACG3JI_RS05790 WP_045407616.1 1155361..1156032(-) (comFC/cflB) [Streptococcus parauberis strain DB-M9]
MVNKCLICGENCRPRLSFTDICFMVNRQSQLCETCSGIFERIGRKHCPICCKVGLELMCSDCKSWFENGVEVSHKALYKY
NLAMKDYFSKYKFQGDYLLKSIFSKELKIYIEKNYEGYTNLVVPISQSRMETRGFNQVSSILADVNIPYIDILRKCEGKK
QSEKTKHQRLESENQFSLLHIENLPKKILIIDDIYTTGTTISQIRKLLHQHGINDIKSVSIAR

Nucleotide


Download         Length: 672 bp        

>NTDB_id=948644 ACG3JI_RS05790 WP_045407616.1 1155361..1156032(-) (comFC/cflB) [Streptococcus parauberis strain DB-M9]
ATGGTGAATAAGTGTTTAATATGTGGAGAAAATTGTAGACCAAGATTATCATTTACGGATATCTGTTTTATGGTGAATCG
CCAAAGCCAACTGTGTGAAACATGTTCTGGCATATTCGAAAGAATTGGTAGGAAACATTGCCCAATCTGTTGCAAAGTTG
GTTTAGAATTAATGTGTAGTGACTGTAAATCATGGTTTGAAAATGGGGTAGAAGTATCACACAAAGCACTATATAAGTAT
AATTTAGCAATGAAAGATTATTTTTCTAAATACAAGTTTCAAGGTGACTATTTATTAAAAAGTATATTTTCTAAAGAATT
AAAAATATACATTGAAAAGAATTATGAAGGTTATACAAATCTGGTTGTACCAATTAGCCAGAGTAGAATGGAAACGCGTG
GGTTTAATCAAGTATCCTCAATTCTTGCAGACGTCAATATTCCTTATATAGATATCTTACGAAAATGTGAAGGAAAAAAG
CAGTCTGAGAAAACCAAACATCAAAGGCTAGAATCTGAGAATCAATTTTCACTTCTTCATATAGAAAATCTTCCAAAAAA
AATACTAATTATTGATGATATTTATACGACGGGGACAACAATTTCACAAATCAGAAAGTTGTTACATCAGCATGGTATAA
ATGATATAAAAAGTGTATCGATAGCAAGGTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(135-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

45

98.655

0.444
  comFC/cflB Streptococcus pneumoniae TIGR4

44.091

98.655

0.435
  comFC/cflB Streptococcus pneumoniae Rx1

43.636

98.655

0.43
  comFC/cflB Streptococcus pneumoniae D39

43.636

98.655

0.43
  comFC/cflB Streptococcus pneumoniae R6

43.636

98.655

0.43
  comFC/cflB Streptococcus mitis SK321

43.182

98.655

0.426