Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   ACG3JI_RS04855 Genome accession   NZ_CP171734
Coordinates   957853..958671 (-) Length   272 a.a.
NCBI ID   WP_394721122.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 952853..963671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JI_RS04835 (ACG3JI_04835) - 953177..953827 (-) 651 WP_003108204.1 HAD family hydrolase -
  ACG3JI_RS04840 (ACG3JI_04840) - 953841..955082 (-) 1242 WP_003107259.1 OFA family MFS transporter -
  ACG3JI_RS04845 (ACG3JI_04845) - 955216..955854 (-) 639 WP_003107261.1 HAD family phosphatase -
  ACG3JI_RS04850 (ACG3JI_04850) pepF 956025..957827 (-) 1803 WP_013794133.1 oligoendopeptidase F Regulator
  ACG3JI_RS04855 (ACG3JI_04855) coiA 957853..958671 (-) 819 WP_394721122.1 competence protein CoiA Machinery gene
  ACG3JI_RS04860 (ACG3JI_04860) - 958860..960005 (-) 1146 WP_003102523.1 MFS transporter -
  ACG3JI_RS04865 (ACG3JI_04865) - 960105..960821 (-) 717 WP_003107266.1 pseudouridine synthase -
  ACG3JI_RS04870 (ACG3JI_04870) nagB 960899..961603 (-) 705 WP_013794136.1 glucosamine-6-phosphate deaminase -
  ACG3JI_RS04875 (ACG3JI_04875) queA 961795..962823 (+) 1029 WP_045407077.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 32288.59 Da        Isoelectric Point: 8.5275

>NTDB_id=948635 ACG3JI_RS04855 WP_394721122.1 957853..958671(-) (coiA) [Streptococcus parauberis strain DB-M9]
MKQAHFAHKNLLNCPNSSLNESTEHLLLKAKLYQNLKKSEEVTIETFFPSINQIADLQVNHKLVLEVQCSSLPPDRLVER
TKNYRDNDQYIIWLLGKNLWIKHKLSYLQKQFLSFSWSIGFYLWEIDLEKNCLRLCYMIHEDLMGKVTCLTRTCPLDGNL
MSFFRMPFQKMNLEPIKVKSDSQLLQKIQKALKYRNKYWMLRQEKAYQMGINLLCLSVEDFYPQYNPPKCEQGFCLIESD
LKPFYDAFEAYNKEISNKDVQTLHPPSFYVKI

Nucleotide


Download         Length: 819 bp        

>NTDB_id=948635 ACG3JI_RS04855 WP_394721122.1 957853..958671(-) (coiA) [Streptococcus parauberis strain DB-M9]
GTGAAACAAGCACATTTTGCTCATAAGAATTTATTAAATTGTCCTAACAGCTCACTTAACGAATCAACGGAACATTTATT
ACTCAAGGCTAAACTCTACCAGAATCTTAAAAAGAGTGAAGAAGTGACGATTGAAACCTTTTTTCCAAGTATAAATCAAA
TTGCTGATTTACAAGTCAATCATAAATTAGTATTAGAAGTCCAGTGTAGTTCATTACCTCCAGATAGATTAGTGGAACGA
ACAAAAAATTATAGAGACAATGATCAATACATTATCTGGTTATTAGGTAAGAATCTATGGATAAAGCATAAATTAAGTTA
TCTTCAAAAACAATTCTTATCATTTTCTTGGTCGATAGGCTTCTATCTCTGGGAAATTGATCTAGAAAAAAATTGCCTAA
GACTCTGCTATATGATTCATGAGGATTTAATGGGGAAGGTAACTTGTTTAACTAGAACTTGTCCTCTGGATGGGAACCTT
ATGTCATTTTTTAGAATGCCATTTCAAAAAATGAATCTAGAACCTATCAAGGTAAAAAGCGATAGCCAACTTCTGCAAAA
AATTCAAAAAGCTTTGAAATATCGGAATAAGTATTGGATGCTTAGGCAGGAAAAAGCCTATCAAATGGGAATTAATCTTT
TATGTTTGTCGGTTGAGGATTTTTATCCGCAATATAATCCACCTAAGTGTGAGCAAGGATTCTGTTTAATTGAGTCGGAT
TTAAAACCTTTTTATGATGCATTTGAGGCATATAATAAAGAAATTTCTAATAAAGACGTGCAAACGCTTCACCCTCCTAG
CTTTTATGTTAAAATATGA

Domains

Predicted by InterProScan.

Competence protein CoiA-like family (CoiA_nuc)

(2-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

45.113

97.794

0.441
  coiA Streptococcus pneumoniae TIGR4

41.045

98.529

0.404
  coiA Streptococcus pneumoniae Rx1

41.045

98.529

0.404
  coiA Streptococcus pneumoniae D39

41.045

98.529

0.404
  coiA Streptococcus pneumoniae R6

41.045

98.529

0.404
  coiA Lactococcus lactis subsp. cremoris KW2

37.143

100

0.382