Detailed information NTG0094850

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: R8609_RS07120
• Genome accession: NZ_AP028412
• Coordinates: 1388015..1389022 (+)
• Length: 335 a.a.
• NCBI ID: WP_002859650.1
• Uniprot ID: Q5HT48
• Organism: Campylobacter jejuni strain IDH-12128
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1383015..1394022

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8609_RS07090 (I12128_14110)	-	1384649..1384957 (-)	309	WP_269468188.1	hypothetical protein	-
R8609_RS07095	-	1384932..1385621 (-)	690	Protein_1380	autotransporter outer membrane beta-barrel domain-containing protein	-
R8609_RS07100 (I12128_14150)	-	1385811..1386512 (-)	702	WP_002902430.1	hypothetical protein	-
R8609_RS07105 (I12128_14160)	-	1386481..1386948 (-)	468	WP_002860417.1	hypothetical protein	-
R8609_RS07115 (I12128_14170)	-	1387514..1387924 (-)	411	WP_002783915.1	hypothetical protein	-
R8609_RS07120 (I12128_14180)	ruvB	1388015..1389022 (+)	1008	WP_002859650.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
R8609_RS07125 (I12128_14190)	amaA	1389026..1390069 (+)	1044	WP_002859651.1	AI-2E family transporter	-
R8609_RS07130 (I12128_14200)	fumC	1390099..1391490 (-)	1392	WP_002859652.1	class II fumarate hydratase	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37295.85 Da
• Isoelectric Point: 4.9081

>NTDB_id=94850 R8609_RS07120 WP_002859650.1 1388015..1389022(+) (ruvB) [Campylobacter jejuni strain IDH-12128]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIIT
EKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKS
YSALKLNYEKTLFEE

Nucleotide

• Length: 1008 bp

>NTDB_id=94850 R8609_RS07120 WP_002859650.1 1388015..1389022(+) (ruvB) [Campylobacter jejuni strain IDH-12128]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCGTTGCGTCCTTCAAATTTTGATGG
TTATATAGGTCAAGAAAGCATTAAAAAAAATTTAAATATCTTTATAGCTGCAGCCAAAAAACGCAATGAATGTTTAGATC
ATATACTTTTTAGTGGTCCTGCAGGACTTGGAAAAACAACACTAGCTAATATCATCTCCTATGAAATGGGTGCAAATATC
AAAACAACCGCCGCTCCTATGATAGAAAAAAGCGGAGATTTAGCCGCTATTTTAACCAATCTTAGCGAAGGAGATATACT
TTTTATCGATGAAATTCATCGCTTAAGTCCTGCTATCGAAGAAGTGCTTTACCCTGCAATGGAGGATTACCGCCTTGATA
TTATCATAGGTAGTGGTCCAGCTGCTCAAACCATAAAAATCGATTTACCAAAATTTACTCTTATAGGGGCTACAACGCGT
GCAGGTATGCTTAGCAATCCTTTACGTGATCGTTTTGGTATGCAATTTAGATTAGAATTTTACAAAGATAGCGAACTTGC
CCTAATCTTGCAAAAAGCAGCTTTAAAACTTAATAAAACTTGCGAAGAAAAAGCCGCACTTGAGATCGCTAAAAGAAGTC
GTTCAACTCCTAGAATAGCTCTAAGGCTTTTAAAAAGAGTTAGAGATTTTGCCGATGTTAATGATGAAGAGATTATCACA
GAAAAAAGAGCTAATGAGGCCTTAAATTCTTTAGGAGTTAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTTGA
ACTTTTAACCGCTGCCAAACAAAAACCTATCGGACTTGCAAGTATTGCTGCGGCTTTAAGTGAAGATGAAAATACCATAG
AAGATGTAATCGAGCCTTATTTACTAGCTAATGGCTATATAGAACGCACTGCAAAAGGGCGTATAGCAAGTGCAAAAAGT
TATAGTGCTTTAAAACTAAACTATGAAAAAACTTTATTTGAGGAGTAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (255-325)

3D structure

• AlphaFold DB: Q5HT48

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	69.461	99.701	0.693
ruvB	Bacillus subtilis subsp. subtilis str. 168	52.761	97.313	0.513
ruvB	Streptococcus pneumoniae TIGR4	48.632	98.209	0.478
ruvB	Streptococcus pneumoniae R6	48.632	98.209	0.478
ruvB	Streptococcus pneumoniae D39	48.632	98.209	0.478
ruvB	Synechocystis sp. PCC 6803	49.533	95.821	0.475