Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACG3JF_RS03915 Genome accession   NZ_CP171732
Coordinates   800966..801568 (-) Length   200 a.a.
NCBI ID   WP_238570166.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 795966..806568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JF_RS03910 (ACG3JF_03910) hpf 800343..800891 (-) 549 WP_003105371.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACG3JF_RS03915 (ACG3JF_03915) comFC/cflB 800966..801568 (-) 603 WP_238570166.1 ComF family protein Machinery gene
  ACG3JF_RS03920 (ACG3JF_03920) comFA/cflA 801627..802931 (-) 1305 WP_045407612.1 DEAD/DEAH box helicase Machinery gene
  ACG3JF_RS03925 (ACG3JF_03925) - 802988..803620 (+) 633 WP_003107489.1 YigZ family protein -
  ACG3JF_RS03930 (ACG3JF_03930) cysK 803743..804672 (+) 930 WP_003103108.1 cysteine synthase A -
  ACG3JF_RS03935 (ACG3JF_03935) - 804748..805101 (-) 354 WP_003103672.1 S1 RNA-binding domain-containing protein -
  ACG3JF_RS03940 (ACG3JF_03940) - 805101..806501 (-) 1401 WP_045407608.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23211.93 Da        Isoelectric Point: 8.9837

>NTDB_id=948428 ACG3JF_RS03915 WP_238570166.1 800966..801568(-) (comFC/cflB) [Streptococcus parauberis strain DB-M3]
MVNRQSQLCETCSGIFERIGRKHCPICCKVGLELMCSDCKSWFENGVEVSHKALYKYNLAMKDYFSKYKFQGDYLLKSIF
SKELKIYIEKNYEGYTNLVVPISQSRMETRGFNQVSSILADVNIPYIDILRKCEGKKQSEKTKHQRLESENQFSLLHIEN
LPKKILIIDDIYTTGTTISQIRKLLHQHGINDIKSVSIAR

Nucleotide


Download         Length: 603 bp        

>NTDB_id=948428 ACG3JF_RS03915 WP_238570166.1 800966..801568(-) (comFC/cflB) [Streptococcus parauberis strain DB-M3]
ATGGTGAATCGCCAAAGCCAACTGTGTGAAACATGTTCTGGCATATTCGAAAGAATTGGTAGGAAACATTGCCCAATCTG
TTGCAAAGTTGGTTTAGAATTAATGTGTAGTGACTGTAAATCATGGTTTGAAAATGGGGTAGAAGTATCACACAAAGCAC
TATATAAGTATAATTTAGCAATGAAAGATTATTTTTCTAAATACAAGTTTCAAGGTGACTATTTATTAAAAAGTATATTT
TCTAAAGAATTAAAAATATACATTGAAAAGAATTATGAAGGTTATACAAATCTGGTTGTACCAATTAGCCAGAGTAGAAT
GGAAACGCGTGGGTTTAATCAAGTATCCTCAATTCTTGCAGACGTCAATATTCCTTATATAGATATCTTACGAAAATGTG
AAGGAAAAAAGCAGTCTGAGAAAACCAAACATCAAAGGCTAGAATCTGAGAATCAATTTTCACTTCTTCATATAGAAAAT
CTTCCAAAAAAAATACTAATTATTGATGATATTTATACGACGGGGACAACAATTTCACAAATCAGAAAGTTGTTACATCA
GCATGGTATAAATGATATAAAAAGTGTATCGATAGCAAGGTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(112-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

46.465

99

0.46
  comFC/cflB Streptococcus pneumoniae TIGR4

45.455

99

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

44.949

99

0.445
  comFC/cflB Streptococcus pneumoniae D39

44.949

99

0.445
  comFC/cflB Streptococcus pneumoniae R6

44.949

99

0.445
  comFC/cflB Streptococcus mitis SK321

44.444

99

0.44