Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   ACG3JH_RS10295 Genome accession   NZ_CP171731
Coordinates   2010424..2011026 (+) Length   200 a.a.
NCBI ID   WP_238570166.1    Uniprot ID   -
Organism   Streptococcus parauberis strain DB-M1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2005424..2016026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACG3JH_RS10270 (ACG3JH_10270) - 2005491..2006891 (+) 1401 WP_045407608.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  ACG3JH_RS10275 (ACG3JH_10275) - 2006891..2007244 (+) 354 WP_003103672.1 S1 RNA-binding domain-containing protein -
  ACG3JH_RS10280 (ACG3JH_10280) cysK 2007320..2008249 (-) 930 WP_003103108.1 cysteine synthase A -
  ACG3JH_RS10285 (ACG3JH_10285) - 2008372..2009004 (-) 633 WP_003107489.1 YigZ family protein -
  ACG3JH_RS10290 (ACG3JH_10290) comFA/cflA 2009061..2010365 (+) 1305 WP_045407612.1 DEAD/DEAH box helicase Machinery gene
  ACG3JH_RS10295 (ACG3JH_10295) comFC/cflB 2010424..2011026 (+) 603 WP_238570166.1 ComF family protein Machinery gene
  ACG3JH_RS10300 (ACG3JH_10300) hpf 2011101..2011649 (+) 549 WP_003105371.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23211.93 Da        Isoelectric Point: 8.9837

>NTDB_id=948397 ACG3JH_RS10295 WP_238570166.1 2010424..2011026(+) (comFC/cflB) [Streptococcus parauberis strain DB-M1]
MVNRQSQLCETCSGIFERIGRKHCPICCKVGLELMCSDCKSWFENGVEVSHKALYKYNLAMKDYFSKYKFQGDYLLKSIF
SKELKIYIEKNYEGYTNLVVPISQSRMETRGFNQVSSILADVNIPYIDILRKCEGKKQSEKTKHQRLESENQFSLLHIEN
LPKKILIIDDIYTTGTTISQIRKLLHQHGINDIKSVSIAR

Nucleotide


Download         Length: 603 bp        

>NTDB_id=948397 ACG3JH_RS10295 WP_238570166.1 2010424..2011026(+) (comFC/cflB) [Streptococcus parauberis strain DB-M1]
ATGGTGAATCGCCAAAGCCAACTGTGTGAAACATGTTCTGGCATATTCGAAAGAATTGGTAGGAAACATTGCCCAATCTG
TTGCAAAGTTGGTTTAGAATTAATGTGTAGTGACTGTAAATCATGGTTTGAAAATGGGGTAGAAGTATCACACAAAGCAC
TATATAAGTATAATTTAGCAATGAAAGATTATTTTTCTAAATACAAGTTTCAAGGTGACTATTTATTAAAAAGTATATTT
TCTAAAGAATTAAAAATATACATTGAAAAGAATTATGAAGGTTATACAAATCTGGTTGTACCAATTAGCCAGAGTAGAAT
GGAAACGCGTGGGTTTAATCAAGTATCCTCAATTCTTGCAGACGTCAATATTCCTTATATAGATATCTTACGAAAATGTG
AAGGAAAAAAGCAGTCTGAGAAAACCAAACATCAAAGGCTAGAATCTGAGAATCAATTTTCACTTCTTCATATAGAAAAT
CTTCCAAAAAAAATACTAATTATTGATGATATTTATACGACGGGGACAACAATTTCACAAATCAGAAAGTTGTTACATCA
GCATGGTATAAATGATATAAAAAGTGTATCGATAGCAAGGTAA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(112-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

46.465

99

0.46
  comFC/cflB Streptococcus pneumoniae TIGR4

45.455

99

0.45
  comFC/cflB Streptococcus pneumoniae Rx1

44.949

99

0.445
  comFC/cflB Streptococcus pneumoniae D39

44.949

99

0.445
  comFC/cflB Streptococcus pneumoniae R6

44.949

99

0.445
  comFC/cflB Streptococcus mitis SK321

44.444

99

0.44