Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IG620_RS00810 Genome accession   NZ_CP147682
Coordinates   184293..184880 (+) Length   195 a.a.
NCBI ID   WP_004281391.1    Uniprot ID   A0A2K8UM26
Organism   Acinetobacter lwoffii strain CCTCC M20191004     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 179293..189880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG620_RS00790 (IG620_00790) tenA 179693..180364 (-) 672 WP_004729210.1 thiaminase II -
  IG620_RS00795 (IG620_00795) - 180587..181675 (+) 1089 WP_338840461.1 DUF475 domain-containing protein -
  IG620_RS00800 (IG620_00800) - 181791..182723 (+) 933 WP_080631276.1 IS5-like element IS17 family transposase -
  IG620_RS00805 (IG620_00805) - 182877..184241 (+) 1365 WP_338840462.1 MFS transporter -
  IG620_RS00810 (IG620_00810) ssb 184293..184880 (+) 588 WP_004281391.1 single-stranded DNA-binding protein Machinery gene
  IG620_RS00815 (IG620_00815) ahpC 185196..185759 (+) 564 WP_004278673.1 alkyl hydroperoxide reductase subunit C -
  IG620_RS00820 (IG620_00820) - 186381..187688 (+) 1308 WP_253112511.1 FAD-dependent oxidoreductase -
  IG620_RS00825 (IG620_00825) - 187692..188540 (+) 849 WP_338840464.1 class I SAM-dependent methyltransferase -
  IG620_RS00835 (IG620_00835) - 188896..189123 (-) 228 WP_004647282.1 hypothetical protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21359.06 Da        Isoelectric Point: 6.4820

>NTDB_id=947992 IG620_RS00810 WP_004281391.1 184293..184880(+) (ssb) [Acinetobacter lwoffii strain CCTCC M20191004]
MRGVNKVILVGTLGKDPETKTFANGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSSRPQNDQGESSFNQPRFNNNNQANNNQGGYGNNPQSGYGSAPQQGGFNNN
QGGGYGNNNPSGFAPKSAPAPTAAPAADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=947992 IG620_RS00810 WP_004281391.1 184293..184880(+) (ssb) [Acinetobacter lwoffii strain CCTCC M20191004]
ATGCGTGGTGTAAATAAAGTTATTTTAGTGGGTACTTTGGGTAAAGATCCGGAAACCAAAACTTTTGCAAATGGTGGCTC
TCTCACTCAATTCTCGATCGCAACCAGCGATTCGTGGACAGATAAAAGTACCGGTGAACGTAAAGAACAAACGGAATGGC
ACCGTATCGTGTTGCATAACCGTTTAGGTGAAATTGCGCAGCAATATCTTCGTAAAGGCTCAAAAGTATATATTGAAGGT
TCATTACGTACCCGTCAGTGGACTGACCAGAATGGTCAGGAACGCTATACGACAGAAATCCGTGGTGAGCAAATGCAGAT
GCTAGACTCTAGCCGTCCTCAAAATGATCAGGGCGAGAGCAGCTTTAACCAGCCACGCTTTAATAACAATAATCAGGCGA
ACAACAACCAGGGCGGTTATGGCAATAACCCGCAATCAGGTTATGGTTCAGCACCACAGCAAGGCGGTTTTAACAACAAC
CAGGGCGGCGGTTATGGCAACAATAACCCGAGTGGTTTTGCGCCAAAATCTGCACCTGCTCCAACAGCAGCACCTGCAGC
AGATCTAGATGATGACTTACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K8UM26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.759

100

0.528
  ssb Vibrio cholerae strain A1552

41.206

100

0.421
  ssb Neisseria meningitidis MC58

37.5

98.462

0.369
  ssb Neisseria gonorrhoeae MS11

37.5

98.462

0.369