Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V7S31_RS01265 Genome accession   NZ_CP147655
Coordinates   262391..262909 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 257391..267909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7S31_RS01235 - 258593..258973 (-) 381 WP_015418645.1 VOC family protein -
  V7S31_RS01240 - 259030..259968 (-) 939 WP_039063888.1 LacI family DNA-binding transcriptional regulator -
  V7S31_RS01245 xth 260031..260789 (-) 759 WP_015240985.1 exodeoxyribonuclease III -
  V7S31_RS01250 - 260786..261343 (-) 558 WP_039063889.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  V7S31_RS01255 - 261340..261921 (-) 582 WP_039063890.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  V7S31_RS01260 rpsR 262108..262347 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  V7S31_RS01265 ssbA 262391..262909 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  V7S31_RS01270 rpsF 262949..263236 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  V7S31_RS01275 ychF 263348..264448 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  V7S31_RS01280 - 264575..266578 (-) 2004 WP_039063891.1 molybdopterin-dependent oxidoreductase -
  V7S31_RS01285 - 266625..266831 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=947828 V7S31_RS01265 WP_004392979.1 262391..262909(-) (ssbA) [Bacillus velezensis strain M1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=947828 V7S31_RS01265 WP_004392979.1 262391..262909(-) (ssbA) [Bacillus velezensis strain M1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378