Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WBM82_RS21900 Genome accession   NZ_CP147494
Coordinates   4141988..4142506 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain YT1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4136988..4147506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS21870 (WBM82_21930) yyaJ 4137492..4138847 (+) 1356 WP_048654832.1 MFS transporter -
  WBM82_RS21875 (WBM82_21935) maa 4138881..4139435 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  WBM82_RS21880 (WBM82_21940) yyaH 4139453..4139833 (-) 381 WP_048654831.1 VOC family protein -
  WBM82_RS21885 (WBM82_21945) ccpB 4139889..4140824 (-) 936 WP_048654830.1 transcriptional regulator CcpB -
  WBM82_RS21890 (WBM82_21950) xth 4140883..4141641 (-) 759 WP_029726087.1 exodeoxyribonuclease III -
  WBM82_RS21895 (WBM82_21955) rpsR 4141705..4141944 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  WBM82_RS21900 (WBM82_21960) ssbA 4141988..4142506 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  WBM82_RS21905 (WBM82_21965) rpsF 4142547..4142834 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  WBM82_RS21910 (WBM82_21970) ychF 4142945..4144045 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  WBM82_RS21915 (WBM82_21975) yyaE 4144172..4146175 (-) 2004 WP_029726086.1 molybdopterin-dependent oxidoreductase -
  WBM82_RS21920 (WBM82_21980) yyzM 4146226..4146432 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=946461 WBM82_RS21900 WP_003219228.1 4141988..4142506(-) (ssbA) [Bacillus subtilis strain YT1]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=946461 WBM82_RS21900 WP_003219228.1 4141988..4142506(-) (ssbA) [Bacillus subtilis strain YT1]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378