Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   WBM82_RS19035 Genome accession   NZ_CP147494
Coordinates   3591542..3592699 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain YT1     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3586542..3597699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS19005 (WBM82_19055) yvyF 3586793..3587212 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  WBM82_RS19010 (WBM82_19060) comFC 3587285..3588007 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  WBM82_RS19015 (WBM82_19065) comFB 3587971..3588267 (-) 297 WP_015483764.1 late competence protein ComFB -
  WBM82_RS19020 (WBM82_19070) comFA 3588327..3589718 (-) 1392 WP_217024082.1 ATP-dependent helicase ComFA Machinery gene
  WBM82_RS19025 (WBM82_19075) fakBA 3589824..3590669 (-) 846 WP_076457520.1 DegV family protein -
  WBM82_RS19030 (WBM82_19080) degU 3590770..3591459 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WBM82_RS19035 (WBM82_19085) degS 3591542..3592699 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  WBM82_RS19040 (WBM82_19090) yvyE 3592916..3593569 (+) 654 WP_003227979.1 YigZ family protein -
  WBM82_RS19045 (WBM82_19095) tagV 3593569..3594744 (+) 1176 WP_064671519.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  WBM82_RS19050 (WBM82_19100) tagO 3594817..3595893 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  WBM82_RS19055 (WBM82_19105) tuaH 3596038..3597231 (-) 1194 WP_198878547.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=946453 WBM82_RS19035 WP_003227983.1 3591542..3592699(-) (degS) [Bacillus subtilis strain YT1]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=946453 WBM82_RS19035 WP_003227983.1 3591542..3592699(-) (degS) [Bacillus subtilis strain YT1]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATCATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1