Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   WBM82_RS19020 Genome accession   NZ_CP147494
Coordinates   3588327..3589718 (-) Length   463 a.a.
NCBI ID   WP_217024082.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3583327..3594718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS18985 (WBM82_19035) flgL 3583499..3584395 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  WBM82_RS18990 (WBM82_19040) flgK 3584406..3585929 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  WBM82_RS18995 (WBM82_19045) flgN 3585948..3586430 (-) 483 WP_014481048.1 flagellar protein FlgN -
  WBM82_RS19000 (WBM82_19050) flgM 3586446..3586712 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  WBM82_RS19005 (WBM82_19055) yvyF 3586793..3587212 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  WBM82_RS19010 (WBM82_19060) comFC 3587285..3588007 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  WBM82_RS19015 (WBM82_19065) comFB 3587971..3588267 (-) 297 WP_015483764.1 late competence protein ComFB -
  WBM82_RS19020 (WBM82_19070) comFA 3588327..3589718 (-) 1392 WP_217024082.1 ATP-dependent helicase ComFA Machinery gene
  WBM82_RS19025 (WBM82_19075) fakBA 3589824..3590669 (-) 846 WP_076457520.1 DegV family protein -
  WBM82_RS19030 (WBM82_19080) degU 3590770..3591459 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WBM82_RS19035 (WBM82_19085) degS 3591542..3592699 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  WBM82_RS19040 (WBM82_19090) yvyE 3592916..3593569 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52587.59 Da        Isoelectric Point: 9.8574

>NTDB_id=946451 WBM82_RS19020 WP_217024082.1 3588327..3589718(-) (comFA) [Bacillus subtilis strain YT1]
MNVPVEKNSSFFRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPHFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFKGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLGARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=946451 WBM82_RS19020 WP_217024082.1 3588327..3589718(-) (comFA) [Bacillus subtilis strain YT1]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTTTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTACTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTCCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCACTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAAAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGGTGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.488

100

0.985