Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   WBM82_RS19030 Genome accession   NZ_CP147494
Coordinates   3590770..3591459 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain YT1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3585770..3596459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS18995 (WBM82_19045) flgN 3585948..3586430 (-) 483 WP_014481048.1 flagellar protein FlgN -
  WBM82_RS19000 (WBM82_19050) flgM 3586446..3586712 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  WBM82_RS19005 (WBM82_19055) yvyF 3586793..3587212 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  WBM82_RS19010 (WBM82_19060) comFC 3587285..3588007 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  WBM82_RS19015 (WBM82_19065) comFB 3587971..3588267 (-) 297 WP_015483764.1 late competence protein ComFB -
  WBM82_RS19020 (WBM82_19070) comFA 3588327..3589718 (-) 1392 WP_217024082.1 ATP-dependent helicase ComFA Machinery gene
  WBM82_RS19025 (WBM82_19075) fakBA 3589824..3590669 (-) 846 WP_076457520.1 DegV family protein -
  WBM82_RS19030 (WBM82_19080) degU 3590770..3591459 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WBM82_RS19035 (WBM82_19085) degS 3591542..3592699 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  WBM82_RS19040 (WBM82_19090) yvyE 3592916..3593569 (+) 654 WP_003227979.1 YigZ family protein -
  WBM82_RS19045 (WBM82_19095) tagV 3593569..3594744 (+) 1176 WP_064671519.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  WBM82_RS19050 (WBM82_19100) tagO 3594817..3595893 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=946452 WBM82_RS19030 WP_003219701.1 3590770..3591459(-) (degU) [Bacillus subtilis strain YT1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=946452 WBM82_RS19030 WP_003219701.1 3590770..3591459(-) (degU) [Bacillus subtilis strain YT1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1