Detailed information NTG0094641

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: R8920_RS01995
• Genome accession: NZ_AP028404
• Coordinates: 401280..402290 (-)
• Length: 336 a.a.
• NCBI ID: WP_002777794.1
• Uniprot ID: A0ABP2NSK5
• Organism: Campylobacter coli strain BCH-11568
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 396280..407290

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8920_RS01980 (B11568_03860)	glmS	396858..398654 (+)	1797	WP_002777801.1	glutamine--fructose-6-phosphate transaminase (isomerizing)	-
R8920_RS01985 (B11568_03870)	fumC	398789..400180 (+)	1392	WP_002777799.1	class II fumarate hydratase	-
R8920_RS01990 (B11568_03880)	-	400227..401270 (-)	1044	WP_002777797.1	AI-2E family transporter	-
R8920_RS01995 (B11568_03890)	ruvB	401280..402290 (-)	1011	WP_002777794.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
R8920_RS02000 (B11568_03900)	-	402380..402790 (+)	411	WP_002822448.1	histidine phosphotransferase	-
R8920_RS02010 (B11568_03910)	-	403355..405491 (+)	2137	Protein_388	autotransporter outer membrane beta-barrel domain-containing protein	-
R8920_RS02015	-	406119..406292 (-)	174	WP_002779755.1	cysteine-rich KTR domain-containing protein	-

Sequence

Protein

• Length: 336 a.a.
• Molecular weight: 37570.98 Da
• Isoelectric Point: 4.7834

>NTDB_id=94641 R8920_RS01995 WP_002777794.1 401280..402290(-) (ruvB) [Campylobacter coli strain BCH-11568]
MDRIVEIEKYSFDETYETSLRPSNFDGYIGQENIKKNLNVFISAAKKRNECLDHILFSGPAGLGKTTLANIISYEMGANI
KTTAAPMIEKSGDLAAILTNLSEGDVLFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
AGMLSNPLRDRFGMQFRLEFYKDEELAIILQKAALKLNKSCENEAALEIAKRSRSTPRIALRLLKRVRDFADVNDEETIT
KERAKEALNSLGVNELGFDAMDLRYLELLTEAKRKPIGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKS
FSVLKLNYEQTLFDEN

Nucleotide

• Length: 1011 bp

>NTDB_id=94641 R8920_RS01995 WP_002777794.1 401280..402290(-) (ruvB) [Campylobacter coli strain BCH-11568]
ATGGATAGAATAGTAGAAATAGAAAAATACTCCTTTGATGAAACTTACGAAACTTCTCTGCGTCCTTCAAATTTTGATGG
CTACATAGGACAAGAAAACATTAAAAAAAATTTAAATGTTTTTATTAGCGCTGCAAAAAAAAGAAATGAATGCTTAGACC
ATATACTTTTTAGTGGGCCTGCAGGACTTGGCAAAACTACATTAGCTAATATTATTTCTTATGAGATGGGTGCAAATATC
AAAACAACTGCGGCTCCTATGATAGAAAAAAGCGGGGATTTGGCTGCAATTTTAACCAATTTAAGCGAAGGAGATGTGCT
TTTTATCGATGAAATTCATCGCTTAAGCCCTGCTATTGAAGAAGTACTTTACCCTGCAATGGAAGATTATAGGCTAGATA
TCATCATCGGTAGTGGCCCTGCAGCACAAACTATAAAAATCGATTTGCCTAAATTTACACTTATTGGCGCTACAACCCGT
GCAGGAATGCTTAGCAATCCTTTAAGAGATCGTTTTGGAATGCAATTTAGACTTGAATTTTATAAAGATGAAGAGCTTGC
TATCATACTTCAAAAAGCTGCACTAAAACTCAATAAAAGCTGTGAAAATGAAGCTGCACTTGAGATTGCCAAAAGAAGTC
GCTCTACTCCTAGAATCGCACTTAGACTTTTAAAAAGAGTGAGAGATTTTGCAGATGTAAATGACGAAGAAACGATCACC
AAAGAAAGGGCTAAAGAAGCATTAAATTCTTTAGGTGTCAATGAGCTTGGTTTTGATGCGATGGATTTAAGATATCTAGA
GCTTTTAACAGAGGCTAAAAGAAAGCCTATAGGACTTTCTAGTATAGCGGCAGCTTTGAGTGAAGATGAAAATACTATTG
AAGATGTAATCGAACCTTATTTGCTTGCAAATGGCTACATAGAACGCACTGCCAAAGGTCGTATAGCAAGTACAAAAAGT
TTTAGTGTACTTAAGCTTAATTACGAACAAACTTTATTTGATGAAAATTGA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

• RuvB C-terminal winged helix domain (WHD_RuvB) (255-325)

• RuvB AAA lid domain (AAA_lid_4) (181-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	68.862	99.405	0.685
ruvB	Bacillus subtilis subsp. subtilis str. 168	53.374	97.024	0.518
ruvB	Streptococcus pneumoniae TIGR4	48.338	98.512	0.476
ruvB	Streptococcus pneumoniae R6	48.338	98.512	0.476
ruvB	Streptococcus pneumoniae D39	48.338	98.512	0.476
ruvB	Synechocystis sp. PCC 6803	49.841	93.75	0.467