Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WBI56_RS21020 Genome accession   NZ_CP147492
Coordinates   4059494..4060012 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain MC4-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4054494..4065012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS20990 (WBI56_20990) yyaJ 4055000..4056355 (+) 1356 WP_014481501.1 MFS transporter -
  WBI56_RS20995 (WBI56_20995) maa 4056389..4056943 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  WBI56_RS21000 (WBI56_21000) yyaH 4056959..4057339 (-) 381 WP_029726089.1 VOC family protein -
  WBI56_RS21005 (WBI56_21005) ccpB 4057395..4058330 (-) 936 WP_086344554.1 transcriptional regulator CcpB -
  WBI56_RS21010 (WBI56_21010) xth 4058388..4059146 (-) 759 WP_003243194.1 exodeoxyribonuclease III -
  WBI56_RS21015 (WBI56_21015) rpsR 4059211..4059450 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  WBI56_RS21020 (WBI56_21020) ssbA 4059494..4060012 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  WBI56_RS21025 (WBI56_21025) rpsF 4060053..4060340 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  WBI56_RS21030 (WBI56_21030) ychF 4060451..4061551 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  WBI56_RS21035 (WBI56_21035) yyaE 4061678..4063681 (-) 2004 WP_137201151.1 molybdopterin-dependent oxidoreductase -
  WBI56_RS21040 (WBI56_21040) yyzM 4063732..4063938 (-) 207 WP_003226838.1 DUF951 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=946381 WBI56_RS21020 WP_003219228.1 4059494..4060012(-) (ssbA) [Bacillus subtilis strain MC4-2]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=946381 WBI56_RS21020 WP_003219228.1 4059494..4060012(-) (ssbA) [Bacillus subtilis strain MC4-2]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378