Detailed information NTG0946273

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: V6U91_RS07060
• Genome accession: NZ_CP147221
• Coordinates: 1392168..1393580 (-)
• Length: 470 a.a.
• NCBI ID: WP_002867037.1
• Uniprot ID: A0A5Y8ZU08
• Organism: Campylobacter jejuni strain LZ-CJ
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1387168..1398580

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6U91_RS07035	-	1387492..1388256 (+)	765	WP_002867032.1	TSUP family transporter	-
V6U91_RS07040	ctsF	1388249..1389430 (-)	1182	WP_002851165.1	type II secretion system F family protein	Machinery gene
V6U91_RS07045	ctsE	1389427..1390986 (-)	1560	WP_002867035.1	GspE/PulE family protein	Machinery gene
V6U91_RS07050	ctsX	1390976..1391563 (-)	588	WP_002867036.1	hypothetical protein	Machinery gene
V6U91_RS07055	ctsP	1391567..1392175 (-)	609	WP_002862129.1	ATP-binding protein	Machinery gene
V6U91_RS07060	ctsD	1392168..1393580 (-)	1413	WP_002867037.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
V6U91_RS07065	ctsR	1393558..1393869 (-)	312	WP_002862131.1	hypothetical protein	Machinery gene
V6U91_RS07070	nifJ	1393893..1397453 (-)	3561	WP_002877436.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
V6U91_RS07075	-	1397546..1398187 (-)	642	WP_002867040.1	HAD family hydrolase	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 53083.63 Da
• Isoelectric Point: 6.6184

>NTDB_id=946273 V6U91_RS07060 WP_002867037.1 1392168..1393580(-) (ctsD) [Campylobacter jejuni strain LZ-CJ]
MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKVTEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide

• Length: 1413 bp

>NTDB_id=946273 V6U91_RS07060 WP_002867037.1 1392168..1393580(-) (ctsD) [Campylobacter jejuni strain LZ-CJ]
ATGATAAGATTAATATTAATTAACATTCTTTTTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAATGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTAGACGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTAGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGTCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCGCAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTTGATTCTATTATTAACTTCCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGCACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGCGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGTAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAACGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (281-454)

3D structure

• AlphaFold DB: A0A5Y8ZU08

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	99.362	100	0.994