Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   V6U91_RS07065 Genome accession   NZ_CP147221
Coordinates   1393558..1393869 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain LZ-CJ     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1388558..1398869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U91_RS07045 ctsE 1389427..1390986 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  V6U91_RS07050 ctsX 1390976..1391563 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  V6U91_RS07055 ctsP 1391567..1392175 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  V6U91_RS07060 ctsD 1392168..1393580 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  V6U91_RS07065 ctsR 1393558..1393869 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  V6U91_RS07070 nifJ 1393893..1397453 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  V6U91_RS07075 - 1397546..1398187 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=946274 V6U91_RS07065 WP_002862131.1 1393558..1393869(-) (ctsR) [Campylobacter jejuni strain LZ-CJ]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=946274 V6U91_RS07065 WP_002862131.1 1393558..1393869(-) (ctsR) [Campylobacter jejuni strain LZ-CJ]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99