Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   V6U91_RS07055 Genome accession   NZ_CP147221
Coordinates   1391567..1392175 (-) Length   202 a.a.
NCBI ID   WP_002862129.1    Uniprot ID   A0A1S2U519
Organism   Campylobacter jejuni strain LZ-CJ     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1386567..1397175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U91_RS07030 - 1386724..1387488 (+) 765 WP_002877433.1 TIGR02757 family protein -
  V6U91_RS07035 - 1387492..1388256 (+) 765 WP_002867032.1 TSUP family transporter -
  V6U91_RS07040 ctsF 1388249..1389430 (-) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  V6U91_RS07045 ctsE 1389427..1390986 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  V6U91_RS07050 ctsX 1390976..1391563 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  V6U91_RS07055 ctsP 1391567..1392175 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  V6U91_RS07060 ctsD 1392168..1393580 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  V6U91_RS07065 ctsR 1393558..1393869 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23743.73 Da        Isoelectric Point: 9.8159

>NTDB_id=946272 V6U91_RS07055 WP_002862129.1 1391567..1392175(-) (ctsP) [Campylobacter jejuni strain LZ-CJ]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFELKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=946272 V6U91_RS07055 WP_002862129.1 1391567..1392175(-) (ctsP) [Campylobacter jejuni strain LZ-CJ]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTAGGAATGTATGATTATGCAATGCTAGAAAGCATTAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTGAATTGAAAAATATTAGTCTTT
TAGAGCTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAATAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S2U519

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.01

100

0.99