Detailed information NTG0945350

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: SGN16_RS24950
• Genome accession: NZ_CP146985
• Coordinates: 5643416..5644285 (+)
• Length: 289 a.a.
• NCBI ID: WP_210640984.1
• Uniprot ID: -
• Organism: Pseudomonas sp. G166
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5638416..5649285

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGN16_RS24925	-	5638624..5638920 (+)	297	WP_210640977.1	DUF2845 domain-containing protein	-
SGN16_RS24930	-	5639236..5639589 (-)	354	WP_003205664.1	BON domain-containing protein	-
SGN16_RS24935	pilA	5639859..5640269 (-)	411	WP_335945957.1	pilin	Machinery gene
SGN16_RS24940	pilB	5640494..5642194 (+)	1701	WP_210640980.1	type IV-A pilus assembly ATPase PilB	Machinery gene
SGN16_RS24945	pilC	5642197..5643414 (+)	1218	WP_210640982.1	type II secretion system F family protein	Machinery gene
SGN16_RS24950	pilD	5643416..5644285 (+)	870	WP_210640984.1	A24 family peptidase	Machinery gene
SGN16_RS24955	coaE	5644297..5644920 (+)	624	WP_210640986.1	dephospho-CoA kinase	-
SGN16_RS24960	yacG	5644917..5645123 (+)	207	WP_003205675.1	DNA gyrase inhibitor YacG	-
SGN16_RS24965	-	5645170..5645385 (-)	216	WP_210640988.1	hypothetical protein	-
SGN16_RS24970	-	5645449..5646135 (-)	687	WP_210640990.1	energy-coupling factor ABC transporter permease	-
SGN16_RS24975	-	5646210..5646623 (-)	414	WP_210640992.1	tautomerase family protein	-
SGN16_RS24980	-	5646775..5647668 (+)	894	WP_335945960.1	LysR substrate-binding domain-containing protein	-
SGN16_RS24985	-	5647737..5648363 (+)	627	WP_003205682.1	DUF1780 domain-containing protein	-
SGN16_RS24990	-	5648360..5648887 (+)	528	WP_335945961.1	MOSC domain-containing protein	-
SGN16_RS24995	-	5648940..5649113 (+)	174	WP_076386361.1	DUF3094 family protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31948.15 Da
• Isoelectric Point: 8.3445

>NTDB_id=945350 SGN16_RS24950 WP_210640984.1 5643416..5644285(+) (pilD) [Pseudomonas sp. G166]
MPLTDFFVLYPLAFVLTALLLGLIVGSFLNVLVWRLPKMLTREWRLQAHDLLGLPAEAPGPVYNLMLPHSQCPHCGHRIR
AWENIPLLSYLILRGRCSNCAAPIGRRYPLTELACGALSAFVAWHFGFGWQAVMVMVLSWGLLGMSLIDAEHQLLPDTLV
LPLLWLGLIVNSFGLFVSLNQAMWGAVAGYLALWSVFWVFKLITGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AVVGVIVLRLRDAPGSTQIPFGPYLAIAGWIALLWGGQITDFYWRSVGF

Nucleotide

• Length: 870 bp

>NTDB_id=945350 SGN16_RS24950 WP_210640984.1 5643416..5644285(+) (pilD) [Pseudomonas sp. G166]
ATGCCCCTGACTGACTTCTTCGTGCTGTATCCCCTGGCCTTCGTGCTCACTGCGTTATTGCTTGGATTGATCGTCGGCAG
TTTCCTTAATGTCCTGGTGTGGCGCCTGCCAAAGATGCTCACCCGCGAATGGCGCCTGCAAGCCCACGACCTGCTGGGCC
TGCCGGCCGAAGCCCCCGGCCCGGTCTACAACCTGATGCTGCCCCATTCCCAGTGCCCCCACTGCGGCCATCGCATCCGC
GCCTGGGAAAACATCCCGTTGCTGAGCTACCTGATATTGCGCGGTCGCTGTTCCAACTGCGCCGCCCCCATTGGCAGGCG
CTACCCGCTGACCGAACTGGCCTGCGGCGCCTTGTCAGCGTTTGTCGCCTGGCACTTCGGCTTTGGCTGGCAGGCCGTGA
TGGTGATGGTATTGAGCTGGGGCCTGCTGGGCATGAGCCTGATCGATGCCGAACATCAATTACTGCCCGATACCCTGGTG
CTGCCGTTGTTGTGGCTGGGTTTGATCGTCAACAGCTTCGGGCTGTTCGTTTCCTTGAATCAGGCGATGTGGGGCGCGGT
AGCCGGCTATCTGGCGCTGTGGTCGGTGTTCTGGGTATTCAAATTGATCACCGGCAAGGAAGGCATGGGCTACGGGGATT
TCAAGCTGCTGGCGATGCTGGGGGCCTGGGGTGGCTGGCAGATCCTGCCACTGACCTTGCTGCTGTCGTCGCTGGTGGGG
GCCGTTGTCGGGGTTATTGTGCTGCGCCTGCGTGACGCTCCGGGATCGACGCAGATCCCCTTCGGACCCTATCTGGCAAT
TGCTGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCGGTCTGTCGGTTTCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.169	98.27	0.522
pilD	Vibrio campbellii strain DS40M4	51.228	98.616	0.505
pilD	Neisseria gonorrhoeae MS11	47.038	99.308	0.467
pilD	Acinetobacter baumannii D1279779	46.975	97.232	0.457
pilD	Acinetobacter nosocomialis M2	46.975	97.232	0.457