Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACFW98_RS06970 Genome accession   NZ_CP170719
Coordinates   1492748..1493443 (-) Length   231 a.a.
NCBI ID   WP_007408165.1    Uniprot ID   A7Z793
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1487748..1498443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS06940 (ACFW98_06940) - 1487763..1488566 (-) 804 WP_007408168.1 M23 family metallopeptidase -
  ACFW98_RS06945 (ACFW98_06945) minD 1488694..1489497 (-) 804 WP_003152655.1 septum site-determining protein MinD -
  ACFW98_RS06950 (ACFW98_06950) minC 1489500..1490180 (-) 681 WP_003152653.1 septum site-determining protein MinC -
  ACFW98_RS06955 (ACFW98_06955) mreD 1490234..1490752 (-) 519 WP_007408167.1 rod shape-determining protein MreD -
  ACFW98_RS06960 (ACFW98_06960) mreC 1490749..1491612 (-) 864 WP_007408166.1 rod shape-determining protein MreC -
  ACFW98_RS06965 (ACFW98_06965) mreB 1491643..1492656 (-) 1014 WP_003152647.1 cell shape-determining protein MreB -
  ACFW98_RS06970 (ACFW98_06970) ysxA/radC 1492748..1493443 (-) 696 WP_007408165.1 DNA repair protein RadC Machinery gene
  ACFW98_RS06975 (ACFW98_06975) - 1493475..1494044 (-) 570 WP_015417926.1 nucleoside triphosphate pyrophosphatase -
  ACFW98_RS06980 (ACFW98_06980) - 1494185..1495186 (-) 1002 WP_015417927.1 SPOR domain-containing protein -
  ACFW98_RS06985 (ACFW98_06985) comC 1495313..1496065 (-) 753 WP_012118107.1 A24 family peptidase Machinery gene
  ACFW98_RS06990 (ACFW98_06990) - 1496205..1497497 (-) 1293 WP_327955009.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26080.30 Da        Isoelectric Point: 9.1909

>NTDB_id=945175 ACFW98_RS06970 WP_007408165.1 1492748..1493443(-) (ysxA/radC) [Bacillus amyloliquefaciens strain JP5008]
MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=945175 ACFW98_RS06970 WP_007408165.1 1492748..1493443(-) (ysxA/radC) [Bacillus amyloliquefaciens strain JP5008]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG
AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA
ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA
TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCACAATCATCCTTCAGGAGATCC
TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

87.879

100

0.879
  radC Streptococcus pneumoniae TIGR4

49.524

90.909

0.45
  radC Streptococcus pneumoniae R6

49.048

90.909

0.446
  radC Streptococcus pneumoniae D39

49.048

90.909

0.446
  radC Streptococcus gordonii str. Challis substr. CH1

47.143

90.909

0.429