NTDB

Overview

Name	ysxA/radC	Type	Machinery gene
Locus tag	ACFXAA_RS18045	Genome accession	NZ_CP170717
Coordinates	3702974..3703669 (+)	Length	231 a.a.
NCBI ID	WP_007408165.1	Uniprot ID	A7Z793
Organism	Bacillus amyloliquefaciens strain JP5014
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3697974..3708669

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAA_RS18025 (ACFXAA_18025)	-	3698920..3700212 (+)	1293	WP_061860764.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-
ACFXAA_RS18030 (ACFXAA_18030)	comC	3700352..3701104 (+)	753	WP_061860763.1	A24 family peptidase	Machinery gene
ACFXAA_RS18035 (ACFXAA_18035)	-	3701231..3702232 (+)	1002	WP_061860762.1	SPOR domain-containing protein	-
ACFXAA_RS18040 (ACFXAA_18040)	-	3702373..3702942 (+)	570	WP_015417926.1	nucleoside triphosphate pyrophosphatase	-
ACFXAA_RS18045 (ACFXAA_18045)	ysxA/radC	3702974..3703669 (+)	696	WP_007408165.1	DNA repair protein RadC	Machinery gene
ACFXAA_RS18050 (ACFXAA_18050)	mreB	3703761..3704774 (+)	1014	WP_003152647.1	cell shape-determining protein MreB	-
ACFXAA_RS18055 (ACFXAA_18055)	mreC	3704805..3705668 (+)	864	WP_007408166.1	rod shape-determining protein MreC	-
ACFXAA_RS18060 (ACFXAA_18060)	mreD	3705665..3706183 (+)	519	WP_007408167.1	rod shape-determining protein MreD	-
ACFXAA_RS18065 (ACFXAA_18065)	minC	3706237..3706917 (+)	681	WP_031378910.1	septum site-determining protein MinC	-
ACFXAA_RS18070 (ACFXAA_18070)	minD	3706920..3707723 (+)	804	WP_003152655.1	septum site-determining protein MinD	-
ACFXAA_RS18075 (ACFXAA_18075)	-	3707851..3708654 (+)	804	WP_007408168.1	M23 family metallopeptidase	-

Sequence

Protein

Download Length: 231 a.a. Molecular weight: 26080.30 Da Isoelectric Point: 9.1909

                                >NTDB_id=945098 ACFXAA_RS18045 WP_007408165.1 3702974..3703669(+) (ysxA/radC) [Bacillus amyloliquefaciens strain JP5014]

MIIRDLPLKLRDFPEKEKPRERLLHFGAEHLSNNELLAILLRTGTKHESVMNLAHRLLRTFDGLRLLKGASAQELSSIPG

IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH

PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide

Download Length: 696 bp

                                >NTDB_id=945098 ACFXAA_RS18045 WP_007408165.1 3702974..3703669(+) (ysxA/radC) [Bacillus amyloliquefaciens strain JP5014]

TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCACTTCGG

AGCCGAACATCTCTCTAACAATGAATTGCTCGCCATCCTGCTGCGGACGGGAACGAAACATGAGTCCGTCATGAACCTCG

CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGACTGTTAAAAGGCGCCTCTGCCCAGGAGCTTTCCAGCATTCCGGGA

ATCGGCACGGTGAAAGCCGTTCAGATTCTTGCCGCAATTGAGCTGGGGAGCCGCATTCATAAGACATCCGCCGGGGAGCA

TTGCGTCATCCGCTCTCCGGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAGGAGCATTTTGTCT

GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCGTTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC

CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCACAATCATCCTTCAGGAGATCC

TACACCGAGCAGGGAAGATATAGAGGTAACCAGGCGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGCTGCTGGATC

ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(11-87)

RadC-like JAB domain (RadC)

(110-229)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A7Z793

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	87.879	100	0.879
radC	Streptococcus pneumoniae TIGR4	49.524	90.909	0.45
radC	Streptococcus pneumoniae R6	49.048	90.909	0.446
radC	Streptococcus pneumoniae D39	49.048	90.909	0.446
radC	Streptococcus gordonii str. Challis substr. CH1	47.143	90.909	0.429

Detailed information NTG0945098