Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V8U11_RS29615 Genome accession   NZ_CP146886
Coordinates   6505634..6506146 (-) Length   170 a.a.
NCBI ID   WP_009045846.1    Uniprot ID   A0AB33WX86
Organism   Pseudomonas chlororaphis strain ZH2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6500634..6511146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8U11_RS29590 (V8U11_29590) - 6500725..6501720 (+) 996 WP_038575408.1 lysylphosphatidylglycerol synthase domain-containing protein -
  V8U11_RS29595 (V8U11_29595) - 6501793..6502548 (-) 756 WP_038575407.1 alpha/beta fold hydrolase -
  V8U11_RS29600 (V8U11_29600) - 6502538..6503647 (-) 1110 WP_124300617.1 DUF3182 family protein -
  V8U11_RS29605 (V8U11_29605) - 6503829..6504836 (-) 1008 WP_338806333.1 GlxA family transcriptional regulator -
  V8U11_RS29610 (V8U11_29610) - 6504940..6505494 (+) 555 WP_096375573.1 cysteine hydrolase family protein -
  V8U11_RS29615 (V8U11_29615) ssb 6505634..6506146 (-) 513 WP_009045846.1 single-stranded DNA-binding protein Machinery gene
  V8U11_RS29620 (V8U11_29620) - 6506156..6507550 (-) 1395 WP_038575385.1 MFS transporter -
  V8U11_RS29625 (V8U11_29625) uvrA 6507731..6510565 (+) 2835 WP_081359606.1 excinuclease ABC subunit UvrA -
  V8U11_RS29630 (V8U11_29630) bfr 6510659..6511123 (-) 465 WP_007924173.1 bacterioferritin -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18934.07 Da        Isoelectric Point: 5.9455

>NTDB_id=944933 V8U11_RS29615 WP_009045846.1 6505634..6506146(-) (ssb) [Pseudomonas chlororaphis strain ZH2]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=944933 V8U11_RS29615 WP_009045846.1 6505634..6506146(-) (ssb) [Pseudomonas chlororaphis strain ZH2]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAATGGACCGACAAGCAAACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGCCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCACAGCCTTCGCAGGCGCCACAGCGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.427

100

0.612
  ssb Glaesserella parasuis strain SC1401

46.392

100

0.529
  ssb Neisseria meningitidis MC58

48.864

100

0.506
  ssb Neisseria gonorrhoeae MS11

48.295

100

0.5