Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V9W62_RS19800 Genome accession   NZ_CP146763
Coordinates   4044373..4044891 (-) Length   172 a.a.
NCBI ID   WP_004392979.1    Uniprot ID   A0A9Q3LJE1
Organism   Bacillus velezensis strain AP81     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4039373..4049891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W62_RS19770 (V9W62_19770) - 4040567..4040947 (-) 381 WP_015418645.1 VOC family protein -
  V9W62_RS19775 (V9W62_19775) - 4040999..4041943 (-) 945 WP_015240984.1 LacI family DNA-binding transcriptional regulator -
  V9W62_RS19780 (V9W62_19780) xth 4042007..4042765 (-) 759 WP_043020840.1 exodeoxyribonuclease III -
  V9W62_RS19785 (V9W62_19785) - 4042762..4043319 (-) 558 WP_015240986.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  V9W62_RS19790 (V9W62_19790) - 4043316..4043897 (-) 582 WP_043020839.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  V9W62_RS19795 (V9W62_19795) rpsR 4044090..4044329 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  V9W62_RS19800 (V9W62_19800) ssbA 4044373..4044891 (-) 519 WP_004392979.1 single-stranded DNA-binding protein SsbA Machinery gene
  V9W62_RS19805 (V9W62_19805) rpsF 4044931..4045218 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  V9W62_RS19810 (V9W62_19810) ychF 4045330..4046430 (-) 1101 WP_004392975.1 redox-regulated ATPase YchF -
  V9W62_RS19815 (V9W62_19815) - 4046557..4048560 (-) 2004 WP_043020838.1 molybdopterin-dependent oxidoreductase -
  V9W62_RS19820 (V9W62_19820) - 4048607..4048813 (-) 207 WP_004392973.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18745.31 Da        Isoelectric Point: 4.7621

>NTDB_id=944543 V9W62_RS19800 WP_004392979.1 4044373..4044891(-) (ssbA) [Bacillus velezensis strain AP81]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=944543 V9W62_RS19800 WP_004392979.1 4044373..4044891(-) (ssbA) [Bacillus velezensis strain AP81]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTAGCTGTGAATCGTACATTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAACCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAATAACCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.837

100

0.988
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378