Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   V9W61_RS16820 Genome accession   NZ_CP146761
Coordinates   3240487..3241614 (-) Length   375 a.a.
NCBI ID   WP_338705828.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JJ1138     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3235487..3246614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W61_RS16780 (V9W61_16780) flgL 3235670..3236581 (-) 912 WP_008348257.1 flagellar hook-associated protein FlgL -
  V9W61_RS16785 (V9W61_16785) flgK 3236590..3238110 (-) 1521 WP_058336981.1 flagellar hook-associated protein FlgK -
  V9W61_RS16790 (V9W61_16790) - 3238126..3238608 (-) 483 WP_338705827.1 flagellar protein FlgN -
  V9W61_RS16795 (V9W61_16795) flgM 3238627..3238890 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  V9W61_RS16800 (V9W61_16800) - 3238970..3239389 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  V9W61_RS16805 (V9W61_16805) comFC 3239446..3239913 (-) 468 WP_038475569.1 ComF family protein Machinery gene
  V9W61_RS16810 (V9W61_16810) - 3239965..3240168 (-) 204 Protein_3255 hypothetical protein -
  V9W61_RS16815 (V9W61_16815) - 3240129..3240422 (-) 294 WP_008348267.1 competence protein ComFB -
  V9W61_RS16820 (V9W61_16820) comFA 3240487..3241614 (-) 1128 WP_338705828.1 DEAD/DEAH box helicase Machinery gene
  V9W61_RS16825 (V9W61_16825) - 3241986..3242828 (-) 843 WP_024719242.1 DegV family protein -
  V9W61_RS16830 (V9W61_16830) degU 3243040..3243729 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  V9W61_RS16835 (V9W61_16835) degS 3243794..3244969 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  V9W61_RS16840 (V9W61_16840) - 3245191..3245859 (+) 669 WP_017357860.1 YigZ family protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 42912.92 Da        Isoelectric Point: 10.4270

>NTDB_id=944401 V9W61_RS16820 WP_338705828.1 3240487..3241614(-) (comFA) [Bacillus altitudinis strain JJ1138]
MLGKVSECGFLYEWTGPQKKETRQIELTWQGELSKGQKRASDRLVEAIQNKFDLLIWAVCGAGKTEVLFHGIKYALNNGM
SVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSIDERLQF
AVLKSMKKTGVRIYLSATPSKKMQKDVAHRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHEHITK
KKRVLLFVPSISTMKKVTHILQVQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAESPIF
SESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=944401 V9W61_RS16820 WP_338705828.1 3240487..3241614(-) (comFA) [Bacillus altitudinis strain JJ1138]
ATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAGACAAATTGAATT
AACATGGCAGGGAGAGCTTTCTAAAGGACAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATTCAAAACAAATTTGATC
TGCTCATTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGAATAAAATATGCGCTAAATAACGGAATG
AGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATTTCAAGGACTGAA
TATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCGCCGCTTATGATCGCTACAACCCATCAGCTAATGA
GATATAAAAACGCCTTTGATGTCCTCATTGTTGACGAAGTCGATGCATTTCCTTATTCAATTGATGAACGGCTTCAGTTT
GCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAATGCAAAAGGATGT
TGCTCATAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAACATTTCAATGGG
TTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAACATATCACAAAG
AAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGTTCAAGATGTAAA
TGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGATACGATGTATTGG
TTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAGGTGGGCGTATTAGGTGCGGAATCTCCTATTTTT
TCAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGGCATCCAGATTTTTTTAACGGAGACGTGTATTTTTTTCA
TTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAAAAGAGTTTTCTG
AAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(32-180)

Helicase conserved C-terminal domain (Helicase_C)

(236-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.216

98.667

0.555
  comFA/cflA Streptococcus pneumoniae Rx1

40.678

94.4

0.384
  comFA/cflA Streptococcus pneumoniae D39

40.678

94.4

0.384
  comFA/cflA Streptococcus pneumoniae R6

40.678

94.4

0.384
  comFA/cflA Streptococcus pneumoniae TIGR4

40.395

94.4

0.381
  comFA/cflA Streptococcus mitis NCTC 12261

40.113

94.4

0.379
  comFA Latilactobacillus sakei subsp. sakei 23K

38.172

99.2

0.379
  comFA/cflA Streptococcus mitis SK321

38.983

94.4

0.368
  comFA Lactococcus lactis subsp. cremoris KW2

37.158

97.6

0.363