Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   V9W61_RS16835 Genome accession   NZ_CP146761
Coordinates   3243794..3244969 (-) Length   391 a.a.
NCBI ID   WP_024719243.1    Uniprot ID   A0A081LEM4
Organism   Bacillus altitudinis strain JJ1138     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3238794..3249969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W61_RS16800 (V9W61_16800) - 3238970..3239389 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  V9W61_RS16805 (V9W61_16805) comFC 3239446..3239913 (-) 468 WP_038475569.1 ComF family protein Machinery gene
  V9W61_RS16810 (V9W61_16810) - 3239965..3240168 (-) 204 Protein_3255 hypothetical protein -
  V9W61_RS16815 (V9W61_16815) - 3240129..3240422 (-) 294 WP_008348267.1 competence protein ComFB -
  V9W61_RS16820 (V9W61_16820) comFA 3240487..3241614 (-) 1128 WP_338705828.1 DEAD/DEAH box helicase Machinery gene
  V9W61_RS16825 (V9W61_16825) - 3241986..3242828 (-) 843 WP_024719242.1 DegV family protein -
  V9W61_RS16830 (V9W61_16830) degU 3243040..3243729 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  V9W61_RS16835 (V9W61_16835) degS 3243794..3244969 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  V9W61_RS16840 (V9W61_16840) - 3245191..3245859 (+) 669 WP_017357860.1 YigZ family protein -
  V9W61_RS16845 (V9W61_16845) - 3245844..3246941 (+) 1098 WP_326112367.1 LCP family protein -
  V9W61_RS16850 (V9W61_16850) - 3246980..3248047 (-) 1068 WP_024719245.1 MraY family glycosyltransferase -
  V9W61_RS16855 (V9W61_16855) - 3248182..3249378 (-) 1197 WP_338706410.1 glycosyltransferase -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 45550.27 Da        Isoelectric Point: 5.8757

>NTDB_id=944403 V9W61_RS16835 WP_024719243.1 3243794..3244969(-) (degS) [Bacillus altitudinis strain JJ1138]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTENERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=944403 V9W61_RS16835 WP_024719243.1 3243794..3244969(-) (degS) [Bacillus altitudinis strain JJ1138]
ATGACAACACCTAAAATGGATCCGAAGTTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGTAAGGA
CGAAGTATTTAGAATCGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTCAAGCAAATTAAACAGCAAG
TCAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTACATACGAGACATGCTAGAAATCGATTATCTGAGGTCAGCAGA
AACTTCAACAAATTCAGCGAAGAAGAAATACGAGAAGCCTATGAAAAAGCACATAACCTGCAAGTAGAATTGACCATGAT
CCAGCAGCGCGAAAAACAGCTGAGGGAAAGAAGAGATGATCTCGAAAGACGATTGTTAAGCCTGCAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGCCAGATCACAGTGGTTCTCAACTATCTCAATCAGGACTTACGCCAAGTTGGTGTTTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTAAGAATTATTGAAGCCCAGGAAGAAGAGCGCAAAAGGGTATCACGAGA
AATCCATGATGGACCTGCTCAGATGCTGGCAAACGTGATGATGCGTTCAGAACTAATTGAACGAATTTTTAGAGACCGTG
GAACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTAAGACAGAATGTGCGAAATGCACTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCGATGGCTTTAGATGATTTGGGTCTCATTCCGACACTGCGAAAATACTTAAACACAATTGAAGAATA
TGATGGAAAAACCAAAATTACGTTCCAATGCCTAGGGGATACAGAAAATGAAAGAATTGCTTCTCAGTTCGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCATTGAAGCATTCCGAAGCTGAAGAAATCTCTGTAAAAGTAGAAGTG
ACAAAAGACTTTGTCACGTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAAGATGTGAAAACAAATAAAAACAA
ATCCTTTGGGTTACTTGGTATGAAAGAGCGCGTAGACTTACTAGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTAGAGTACCGTTAACATTACAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081LEM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

85.455

98.465

0.841