Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   V9W61_RS11430 Genome accession   NZ_CP146761
Coordinates   2245232..2245525 (-) Length   97 a.a.
NCBI ID   WP_008342186.1    Uniprot ID   A0A5K1NAM4
Organism   Bacillus altitudinis strain JJ1138     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2240232..2250525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W61_RS11380 (V9W61_11380) sinR 2240396..2240731 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  V9W61_RS11385 (V9W61_11385) - 2240799..2241599 (-) 801 WP_008342195.1 TasA family protein -
  V9W61_RS11390 (V9W61_11390) - 2241658..2242230 (-) 573 WP_017357979.1 signal peptidase I -
  V9W61_RS11395 (V9W61_11395) tapA 2242280..2242807 (-) 528 WP_335352854.1 amyloid fiber anchoring/assembly protein TapA -
  V9W61_RS11400 (V9W61_11400) - 2243060..2243386 (+) 327 WP_047945459.1 DUF3889 domain-containing protein -
  V9W61_RS11405 (V9W61_11405) - 2243421..2243615 (-) 195 WP_008342191.1 YqzE family protein -
  V9W61_RS11410 (V9W61_11410) comGG 2243676..2244059 (-) 384 WP_335352540.1 competence type IV pilus minor pilin ComGG -
  V9W61_RS11415 (V9W61_11415) comGF 2244056..2244553 (-) 498 WP_335352541.1 competence type IV pilus minor pilin ComGF -
  V9W61_RS11420 (V9W61_11420) comGE 2244495..2244809 (-) 315 WP_047945462.1 competence type IV pilus minor pilin ComGE -
  V9W61_RS11425 (V9W61_11425) comGD 2244793..2245239 (-) 447 WP_047945463.1 competence type IV pilus minor pilin ComGD -
  V9W61_RS11430 (V9W61_11430) comGC 2245232..2245525 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  V9W61_RS11435 (V9W61_11435) comGB 2245542..2246582 (-) 1041 WP_160757522.1 competence type IV pilus assembly protein ComGB -
  V9W61_RS11440 (V9W61_11440) comGA 2246563..2247633 (-) 1071 WP_024718839.1 competence type IV pilus ATPase ComGA Machinery gene
  V9W61_RS11445 (V9W61_11445) - 2248092..2248964 (-) 873 WP_035390819.1 STAS domain-containing protein -
  V9W61_RS11455 (V9W61_11455) - 2249189..2249569 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  V9W61_RS11460 (V9W61_11460) - 2249782..2250024 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.62 Da        Isoelectric Point: 6.7081

>NTDB_id=944383 V9W61_RS11430 WP_008342186.1 2245232..2245525(-) (comGC) [Bacillus altitudinis strain JJ1138]
MNDKGFTLLEMLIVMLVISILLLITIPNITRHHQSIQAKGCEGLKSMVSTQVMAYELEHDGKTPSLAELEKEGYVKKGLT
CPNGKAIFIQNGDVKNE

Nucleotide


Download         Length: 294 bp        

>NTDB_id=944383 V9W61_RS11430 WP_008342186.1 2245232..2245525(-) (comGC) [Bacillus altitudinis strain JJ1138]
ATGAATGATAAAGGATTTACACTGTTAGAAATGTTAATTGTCATGCTTGTGATCTCCATTCTTTTATTGATCACCATTCC
AAATATCACTCGGCATCATCAAAGCATTCAAGCAAAGGGCTGTGAAGGGCTGAAATCAATGGTGAGTACACAGGTAATGG
CATATGAATTAGAGCATGACGGCAAGACGCCATCTTTAGCTGAATTAGAAAAAGAAGGCTATGTCAAAAAAGGATTAACT
TGTCCGAATGGAAAGGCAATTTTCATTCAAAACGGGGATGTGAAAAATGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NAM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

67.01

100

0.67
  comGC Staphylococcus aureus MW2

41.304

94.845

0.392
  comGC Staphylococcus aureus N315

41.304

94.845

0.392