Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   V9W61_RS11440 Genome accession   NZ_CP146761
Coordinates   2246563..2247633 (-) Length   356 a.a.
NCBI ID   WP_024718839.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JJ1138     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2241563..2252633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W61_RS11390 (V9W61_11390) - 2241658..2242230 (-) 573 WP_017357979.1 signal peptidase I -
  V9W61_RS11395 (V9W61_11395) tapA 2242280..2242807 (-) 528 WP_335352854.1 amyloid fiber anchoring/assembly protein TapA -
  V9W61_RS11400 (V9W61_11400) - 2243060..2243386 (+) 327 WP_047945459.1 DUF3889 domain-containing protein -
  V9W61_RS11405 (V9W61_11405) - 2243421..2243615 (-) 195 WP_008342191.1 YqzE family protein -
  V9W61_RS11410 (V9W61_11410) comGG 2243676..2244059 (-) 384 WP_335352540.1 competence type IV pilus minor pilin ComGG -
  V9W61_RS11415 (V9W61_11415) comGF 2244056..2244553 (-) 498 WP_335352541.1 competence type IV pilus minor pilin ComGF -
  V9W61_RS11420 (V9W61_11420) comGE 2244495..2244809 (-) 315 WP_047945462.1 competence type IV pilus minor pilin ComGE -
  V9W61_RS11425 (V9W61_11425) comGD 2244793..2245239 (-) 447 WP_047945463.1 competence type IV pilus minor pilin ComGD -
  V9W61_RS11430 (V9W61_11430) comGC 2245232..2245525 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  V9W61_RS11435 (V9W61_11435) comGB 2245542..2246582 (-) 1041 WP_160757522.1 competence type IV pilus assembly protein ComGB -
  V9W61_RS11440 (V9W61_11440) comGA 2246563..2247633 (-) 1071 WP_024718839.1 competence type IV pilus ATPase ComGA Machinery gene
  V9W61_RS11445 (V9W61_11445) - 2248092..2248964 (-) 873 WP_035390819.1 STAS domain-containing protein -
  V9W61_RS11455 (V9W61_11455) - 2249189..2249569 (-) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  V9W61_RS11460 (V9W61_11460) - 2249782..2250024 (+) 243 WP_003217440.1 DUF2626 domain-containing protein -
  V9W61_RS11465 (V9W61_11465) - 2250073..2250711 (-) 639 WP_017357989.1 MBL fold metallo-hydrolase -
  V9W61_RS11470 (V9W61_11470) - 2250872..2251045 (+) 174 WP_003217333.1 DUF2759 domain-containing protein -
  V9W61_RS11475 (V9W61_11475) - 2251070..2251384 (-) 315 WP_056705254.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40366.72 Da        Isoelectric Point: 9.0449

>NTDB_id=944384 V9W61_RS11440 WP_024718839.1 2246563..2247633(-) (comGA) [Bacillus altitudinis strain JJ1138]
MYGIEYLGQELLEEACRMRASDVHIVPREKEASVSFRVDADLIQQRIIDKKSGERLIAHFKFLSSMDIGERRRPQNGSLA
VMLRRGQVFVRLSTLPTVNDESLVIRILPQDHVPKTKYLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKHFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDMIVLGEIRDAETARTAIRAALTGHLVMSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELACPFCGETCELYCKLNRPVRRTNVFELLYGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKSTYHRWVYEEANL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=944384 V9W61_RS11440 WP_024718839.1 2246563..2247633(-) (comGA) [Bacillus altitudinis strain JJ1138]
TTGTATGGTATTGAATATTTGGGGCAAGAGCTGCTAGAAGAGGCGTGCCGCATGAGAGCATCTGATGTGCATATTGTTCC
GAGAGAAAAGGAAGCTTCAGTCTCTTTTCGTGTAGACGCTGACCTCATTCAGCAGCGGATCATTGACAAAAAGAGCGGAG
AGCGGCTCATTGCTCATTTCAAATTTTTATCTTCTATGGATATTGGTGAAAGAAGGAGACCACAAAATGGATCATTGGCT
GTGATGTTAAGACGCGGTCAAGTGTTTGTTCGGCTCTCTACACTACCAACTGTCAATGATGAAAGTCTAGTGATTCGGAT
TTTACCGCAGGATCATGTGCCGAAAACAAAGTATTTGTCACTGTTCCCGAAGGCTTCAGCGAGATTATTATCGTTTCTGA
ATCATTCGCATGGGCTCATTTTATTTACAGGACCAACAAATTCAGGGAAAACGACAACACTTTATTCATTGATTCAGTTT
GCCAAAAAACATTTTAATCGGAATATTATTACCCTTGAAGATCCTGTGGAAACAAGAAATGAAGAAGTGCTGCAGGTTCA
AGTAAATGAAAAAGCTGGTATCACGTATGCGGCAGGTTTACGCGCTATTTTAAGACATGATCCAGATATGATTGTGCTTG
GAGAAATAAGAGATGCGGAAACAGCCAGAACAGCTATTAGAGCAGCTTTGACAGGTCATTTAGTCATGAGCACATTGCAC
GCAAAGAATGCAAAAGGAGCTCTTTATCGAATGCTCGAATTTGGTGTGACAATGAATGAACTCGAACAAACAATGGTTGC
TATTGCTGCTCAGCGGTTAATCGAACTCGCATGTCCATTTTGCGGCGAAACGTGTGAGCTTTATTGCAAACTAAATCGGC
CAGTCAGACGAACAAATGTATTTGAATTGCTTTACGGAAAGGAGCTTGGTGAGTGTATCAAAGAGGCAAAAGGAGAATAC
GCTCATTCGTCATACGAAACACTGCAAAGATTAATTCGGAAAGGAGTGGCACTCGGCTATTTATCAAAAAGCACATATCA
TCGCTGGGTTTATGAAGAAGCGAACCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.888

100

0.649