Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   V9W61_RS11380 Genome accession   NZ_CP146761
Coordinates   2240396..2240731 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JJ1138     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2235396..2245731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W61_RS11360 (V9W61_11360) gcvT 2235872..2236969 (-) 1098 WP_072367814.1 glycine cleavage system aminomethyltransferase GcvT -
  V9W61_RS11365 (V9W61_11365) - 2237531..2239201 (+) 1671 WP_008342199.1 SNF2-related protein -
  V9W61_RS11370 (V9W61_11370) - 2239216..2240013 (+) 798 WP_144679351.1 YqhG family protein -
  V9W61_RS11375 (V9W61_11375) - 2240198..2240362 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  V9W61_RS11380 (V9W61_11380) sinR 2240396..2240731 (+) 336 WP_017357978.1 helix-turn-helix domain-containing protein Regulator
  V9W61_RS11385 (V9W61_11385) - 2240799..2241599 (-) 801 WP_008342195.1 TasA family protein -
  V9W61_RS11390 (V9W61_11390) - 2241658..2242230 (-) 573 WP_017357979.1 signal peptidase I -
  V9W61_RS11395 (V9W61_11395) tapA 2242280..2242807 (-) 528 WP_335352854.1 amyloid fiber anchoring/assembly protein TapA -
  V9W61_RS11400 (V9W61_11400) - 2243060..2243386 (+) 327 WP_047945459.1 DUF3889 domain-containing protein -
  V9W61_RS11405 (V9W61_11405) - 2243421..2243615 (-) 195 WP_008342191.1 YqzE family protein -
  V9W61_RS11410 (V9W61_11410) comGG 2243676..2244059 (-) 384 WP_335352540.1 competence type IV pilus minor pilin ComGG -
  V9W61_RS11415 (V9W61_11415) comGF 2244056..2244553 (-) 498 WP_335352541.1 competence type IV pilus minor pilin ComGF -
  V9W61_RS11420 (V9W61_11420) comGE 2244495..2244809 (-) 315 WP_047945462.1 competence type IV pilus minor pilin ComGE -
  V9W61_RS11425 (V9W61_11425) comGD 2244793..2245239 (-) 447 WP_047945463.1 competence type IV pilus minor pilin ComGD -
  V9W61_RS11430 (V9W61_11430) comGC 2245232..2245525 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=944382 V9W61_RS11380 WP_017357978.1 2240396..2240731(+) (sinR) [Bacillus altitudinis strain JJ1138]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=944382 V9W61_RS11380 WP_017357978.1 2240396..2240731(+) (sinR) [Bacillus altitudinis strain JJ1138]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928