Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACFIOK_RS05915 Genome accession   NZ_CP170434
Coordinates   1131836..1132438 (+) Length   200 a.a.
NCBI ID   WP_000271545.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t315     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1126836..1137438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOK_RS05880 mreC 1126852..1127694 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  ACFIOK_RS05885 mreD 1127694..1128224 (+) 531 WP_410540902.1 rod shape-determining protein MreD -
  ACFIOK_RS05890 rplU 1128643..1128951 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  ACFIOK_RS05895 - 1128957..1129277 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  ACFIOK_RS05900 rpmA 1129289..1129573 (+) 285 WP_000916187.1 50S ribosomal protein L27 -
  ACFIOK_RS05905 obgE 1130062..1131354 (+) 1293 WP_000496103.1 GTPase ObgE -
  ACFIOK_RS05910 - 1131367..1131822 (+) 456 WP_000368902.1 ACT domain-containing protein -
  ACFIOK_RS05915 ruvA 1131836..1132438 (+) 603 WP_000271545.1 Holliday junction branch migration protein RuvA Machinery gene
  ACFIOK_RS05920 ruvB 1132470..1133474 (+) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACFIOK_RS05925 queA 1133476..1134501 (+) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  ACFIOK_RS05930 tgt 1134524..1135663 (+) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  ACFIOK_RS05935 yajC 1135682..1135942 (+) 261 WP_001160682.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22288.54 Da        Isoelectric Point: 6.0240

>NTDB_id=944310 ACFIOK_RS05915 WP_000271545.1 1131836..1132438(+) (ruvA) [Staphylococcus aureus strain t315]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDLLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=944310 ACFIOK_RS05915 WP_000271545.1 1131836..1132438(+) (ruvA) [Staphylococcus aureus strain t315]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGCAAAGTGAAAATCA
CTGAAGAAGATAGCGATTTATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425