Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   V7A36_RS02375 Genome accession   NZ_CP146738
Coordinates   492017..493021 (+) Length   334 a.a.
NCBI ID   WP_198493935.1    Uniprot ID   -
Organism   Lactococcus petauri strain L8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 487017..498021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7A36_RS02355 (V7A36_02355) - 487393..488097 (+) 705 WP_004258993.1 Bax inhibitor-1/YccA family protein -
  V7A36_RS02360 (V7A36_02360) - 488154..488978 (-) 825 WP_019292049.1 Cof-type HAD-IIB family hydrolase -
  V7A36_RS02365 (V7A36_02365) - 489343..490764 (+) 1422 WP_019292048.1 NCS2 family permease -
  V7A36_RS02370 (V7A36_02370) - 490841..491941 (+) 1101 WP_198493934.1 YdcF family protein -
  V7A36_RS02375 (V7A36_02375) coiA 492017..493021 (+) 1005 WP_198493935.1 competence protein CoiA Machinery gene
  V7A36_RS02380 (V7A36_02380) pepF 493005..494810 (+) 1806 WP_019292045.1 oligoendopeptidase F Regulator
  V7A36_RS02385 (V7A36_02385) - 494810..495493 (+) 684 WP_019292044.1 O-methyltransferase -
  V7A36_RS02390 (V7A36_02390) - 495591..496499 (+) 909 WP_019292043.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39777.63 Da        Isoelectric Point: 8.4980

>NTDB_id=943878 V7A36_RS02375 WP_198493935.1 492017..493021(+) (coiA) [Lactococcus petauri strain L8]
MLIALDKDGKTINLLDNSSISGPFYCPACKSPLRLKKGKIKIPHFAHISVKNCDSWSENESAQHLGLKLSLYQWFKKKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEKGYYVLWLQGRDLWLKNNLSSLQKNLLYYSAVRGF
CFWELDWNRKKLRLKSLVYQDLKGRPIYLTEEFDFFQENLLELLRQPFREGEDLSLDAPKQEELQLFVQKQLYYQVPKWL
KMQEKYYEQGKNLLDLNWNKSYWSPPSLNLLTFDFSDDTPESFFQVDTPLEKYYHSFYESFQLQEHEKLHTPSFYAIIKD
KNKVKNGEWNGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=943878 V7A36_RS02375 WP_198493935.1 492017..493021(+) (coiA) [Lactococcus petauri strain L8]
ATGTTAATAGCTTTGGATAAAGACGGAAAAACAATTAATCTCCTTGACAATTCTTCAATTAGTGGCCCTTTTTATTGCCC
AGCCTGTAAGTCGCCCCTTCGTTTAAAAAAAGGGAAGATAAAAATTCCTCACTTTGCTCACATATCCGTAAAAAATTGTG
ACTCTTGGAGCGAAAATGAATCTGCACAACACTTGGGCTTAAAACTCAGTTTGTATCAATGGTTTAAGAAAAAAGAGAAA
GTTGAGTTGGAAAAGTATGTGCCAGAAATTAAGCAAACGGCTGATTTGTTAGTAAATGATAAACTTGCTATTGAAATACA
GTGTTCGCCGCTTTCTTTGCAACGTTTAGAAGAGAGAACGGTAAGTTACAAAGAAAAAGGATATTATGTCCTTTGGCTTC
AAGGAAGGGACTTATGGCTTAAGAATAACCTATCATCTTTGCAGAAAAATTTGCTCTATTATTCAGCAGTGAGAGGTTTT
TGTTTTTGGGAATTAGACTGGAACAGAAAAAAACTACGGTTGAAATCATTGGTTTATCAAGATTTGAAAGGACGACCGAT
TTATCTTACTGAAGAGTTTGACTTCTTTCAAGAGAATCTCTTAGAGCTCTTACGCCAACCCTTTCGAGAAGGAGAAGATC
TTAGTTTAGATGCTCCAAAACAGGAAGAGTTACAGTTGTTTGTTCAGAAACAACTGTATTATCAAGTGCCAAAATGGCTT
AAAATGCAAGAAAAATATTATGAACAAGGAAAAAATTTGCTAGACCTCAATTGGAATAAGAGCTACTGGAGTCCTCCAAG
CTTAAACTTATTGACCTTTGACTTTTCCGATGATACGCCAGAAAGCTTTTTTCAAGTAGATACTCCCTTGGAAAAATATT
ATCACAGCTTCTATGAAAGTTTTCAGTTACAAGAACACGAAAAACTGCATACACCAAGCTTCTATGCTATAATTAAAGAT
AAAAATAAAGTGAAAAACGGAGAATGGAATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.22

98.204

0.503
  coiA Streptococcus pneumoniae Rx1

39.939

98.204

0.392
  coiA Streptococcus pneumoniae D39

39.939

98.204

0.392
  coiA Streptococcus pneumoniae R6

39.939

98.204

0.392
  coiA Streptococcus pneumoniae TIGR4

39.939

98.204

0.392
  coiA Streptococcus mitis NCTC 12261

39.024

98.204

0.383