Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   V7A36_RS00670 Genome accession   NZ_CP146738
Coordinates   139033..139449 (+) Length   138 a.a.
NCBI ID   WP_270517134.1    Uniprot ID   -
Organism   Lactococcus petauri strain L8     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 134033..144449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7A36_RS00645 (V7A36_00645) guaB 134863..136344 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  V7A36_RS00650 (V7A36_00650) rpsU 136470..136646 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  V7A36_RS00655 (V7A36_00655) comGA 136832..137776 (+) 945 WP_040086850.1 competence type IV pilus ATPase ComGA Machinery gene
  V7A36_RS00660 (V7A36_00660) comGB 137715..138734 (+) 1020 WP_256777882.1 competence type IV pilus assembly protein ComGB Machinery gene
  V7A36_RS00665 (V7A36_00665) comYC 138753..139058 (+) 306 WP_040087209.1 competence type IV pilus major pilin ComGC Machinery gene
  V7A36_RS00670 (V7A36_00670) comGD 139033..139449 (+) 417 WP_270517134.1 competence type IV pilus minor pilin ComGD Machinery gene
  V7A36_RS00675 (V7A36_00675) comGE 139481..139714 (+) 234 WP_019293009.1 competence type IV pilus minor pilin ComGE -
  V7A36_RS00680 (V7A36_00680) comGF 139701..140135 (+) 435 WP_230625259.1 competence type IV pilus minor pilin ComGF -
  V7A36_RS00685 (V7A36_00685) - 140367..141212 (+) 846 WP_270315874.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  V7A36_RS00690 (V7A36_00690) - 141283..142167 (-) 885 WP_040086846.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15730.32 Da        Isoelectric Point: 9.7749

>NTDB_id=943859 V7A36_RS00670 WP_270517134.1 139033..139449(+) (comGD) [Lactococcus petauri strain L8]
MQNVMYRIKALTLLESLLVLFLCSSVLFLFSGSVKQSVRIARAEIFILQFEQLYKDTQRMAGLKGQQQTLSASNGTLYSQ
EEVLKVPEEVEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKKIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=943859 V7A36_RS00670 WP_270517134.1 139033..139449(+) (comGD) [Lactococcus petauri strain L8]
ATGCAAAACGTAATGTACCGAATTAAAGCTTTGACCTTACTAGAGAGTTTACTAGTCCTTTTCCTTTGCTCTTCTGTTCT
TTTTCTCTTTTCAGGTTCGGTCAAACAAAGTGTCAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAGCAACTTT
ATAAGGATACCCAGCGTATGGCAGGATTAAAGGGACAGCAACAGACATTGAGTGCGAGTAATGGCACACTATACAGCCAA
GAGGAAGTGCTGAAAGTTCCAGAGGAGGTTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAACTCGAG
CCTACAAAAAATTACAATATTTCTTCCTTATCAGAAAAAAACCATCTCTTATCAATTGGAAATTGGAAGCGGGAAATATA
AGAAAAAAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

49.275

100

0.493
  comYD Streptococcus mutans UA140

42.424

95.652

0.406
  comYD Streptococcus mutans UA159

42.424

95.652

0.406
  comGD/cglD Streptococcus mitis SK321

41.085

93.478

0.384
  comGD/cglD Streptococcus pneumoniae TIGR4

40.31

93.478

0.377
  comGD/cglD Streptococcus mitis NCTC 12261

39.231

94.203

0.37
  comGD/cglD Streptococcus pneumoniae Rx1

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae D39

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae R6

38.76

93.478

0.362