Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACFIOL_RS05630 Genome accession   NZ_CP170416
Coordinates   1103704..1104390 (+) Length   228 a.a.
NCBI ID   WP_000692870.1    Uniprot ID   Q8NW77
Organism   Staphylococcus aureus strain t21644     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1098704..1109390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOL_RS05615 - 1098816..1101446 (+) 2631 WP_000425353.1 valine--tRNA ligase -
  ACFIOL_RS05620 - 1101459..1102730 (+) 1272 WP_001108346.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACFIOL_RS05625 - 1103000..1103707 (+) 708 WP_000261115.1 prepilin peptidase -
  ACFIOL_RS05630 ysxA/radC 1103704..1104390 (+) 687 WP_000692870.1 RadC family protein Machinery gene
  ACFIOL_RS05635 - 1104458..1104742 (+) 285 WP_000171859.1 hypothetical protein -
  ACFIOL_RS05640 - 1104859..1105056 (-) 198 WP_000025835.1 hypothetical protein -
  ACFIOL_RS05645 - 1105216..1105689 (+) 474 WP_410534688.1 DUF4930 family protein -
  ACFIOL_RS05650 - 1105763..1105882 (+) 120 WP_000840602.1 hypothetical protein -
  ACFIOL_RS05655 mreC 1106081..1106923 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  ACFIOL_RS05660 mreD 1106923..1107453 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  ACFIOL_RS05665 rplU 1107815..1108123 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  ACFIOL_RS05670 - 1108129..1108449 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  ACFIOL_RS05675 rpmA 1108461..1108745 (+) 285 WP_000916187.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25311.28 Da        Isoelectric Point: 7.0539

>NTDB_id=943689 ACFIOL_RS05630 WP_000692870.1 1103704..1104390(+) (ysxA/radC) [Staphylococcus aureus strain t21644]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=943689 ACFIOL_RS05630 WP_000692870.1 1103704..1104390(+) (ysxA/radC) [Staphylococcus aureus strain t21644]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NW77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377