Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACFIOE_RS07860 Genome accession   NZ_CP170411
Coordinates   1638109..1638795 (-) Length   228 a.a.
NCBI ID   WP_410538085.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1633109..1643795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOE_RS07815 rpmA 1633880..1634164 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  ACFIOE_RS07820 - 1634176..1634496 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  ACFIOE_RS07825 rplU 1634502..1634810 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  ACFIOE_RS07830 mreD 1635046..1635576 (-) 531 WP_001259925.1 rod shape-determining protein MreD -
  ACFIOE_RS07835 mreC 1635576..1636418 (-) 843 WP_000911041.1 rod shape-determining protein MreC -
  ACFIOE_RS07840 - 1636617..1636736 (-) 120 WP_000840602.1 hypothetical protein -
  ACFIOE_RS07845 - 1636810..1637283 (-) 474 WP_001236734.1 DUF4930 family protein -
  ACFIOE_RS07850 - 1637443..1637640 (+) 198 WP_000025835.1 hypothetical protein -
  ACFIOE_RS07855 - 1637757..1638041 (-) 285 WP_000171859.1 hypothetical protein -
  ACFIOE_RS07860 ysxA/radC 1638109..1638795 (-) 687 WP_410538085.1 RadC family protein Machinery gene
  ACFIOE_RS07865 - 1638792..1639499 (-) 708 WP_000261115.1 prepilin peptidase -
  ACFIOE_RS07870 - 1639769..1641040 (-) 1272 WP_001108346.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACFIOE_RS07875 - 1641053..1643683 (-) 2631 WP_000425353.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25291.29 Da        Isoelectric Point: 7.0540

>NTDB_id=943550 ACFIOE_RS07860 WP_410538085.1 1638109..1638795(-) (ysxA/radC) [Staphylococcus aureus strain t002]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIKVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLEHIIIGDNRLTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=943550 ACFIOE_RS07860 WP_410538085.1 1638109..1638795(-) (ysxA/radC) [Staphylococcus aureus strain t002]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATAAAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGAGCATATTATAATCGGTGATAATA
GACTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(103-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

51.786

98.246

0.509
  radC Streptococcus gordonii str. Challis substr. CH1

39.45

95.614

0.377
  radC Streptococcus pneumoniae TIGR4

40.566

92.982

0.377
  radC Streptococcus pneumoniae R6

40.094

92.982

0.373
  radC Streptococcus pneumoniae D39

40.094

92.982

0.373