Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACFIOR_RS05760 Genome accession   NZ_CP170409
Coordinates   1104500..1105186 (+) Length   228 a.a.
NCBI ID   WP_410539420.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t359     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1099500..1110186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOR_RS05750 - 1102255..1103526 (+) 1272 WP_001108346.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACFIOR_RS05755 - 1103796..1104503 (+) 708 WP_000261121.1 prepilin peptidase -
  ACFIOR_RS05760 ysxA/radC 1104500..1105186 (+) 687 WP_410539420.1 RadC family protein Machinery gene
  ACFIOR_RS05765 - 1105254..1105538 (+) 285 WP_000171859.1 hypothetical protein -
  ACFIOR_RS05770 - 1105655..1105852 (-) 198 WP_000025835.1 hypothetical protein -
  ACFIOR_RS05775 - 1106012..1106485 (+) 474 WP_001236734.1 DUF4930 family protein -
  ACFIOR_RS05780 - 1106559..1106678 (+) 120 WP_000840601.1 hypothetical protein -
  ACFIOR_RS05785 mreC 1106879..1107721 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  ACFIOR_RS05790 mreD 1107721..1108251 (+) 531 WP_001259925.1 rod shape-determining protein MreD -
  ACFIOR_RS05795 rplU 1108613..1108921 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  ACFIOR_RS05800 - 1108927..1109247 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  ACFIOR_RS05805 rpmA 1109259..1109543 (+) 285 WP_000916187.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25296.27 Da        Isoelectric Point: 6.7572

>NTDB_id=943425 ACFIOR_RS05760 WP_410539420.1 1104500..1105186(+) (ysxA/radC) [Staphylococcus aureus strain t359]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITLPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKETCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=943425 ACFIOR_RS05760 WP_410539420.1 1104500..1105186(+) (ysxA/radC) [Staphylococcus aureus strain t359]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGCATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGCTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCTACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAACCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATTATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTGTTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus gordonii str. Challis substr. CH1

41.553

96.053

0.399
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377