Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | V9J15_RS04000 | Genome accession | NZ_CP146613 |
| Coordinates | 862458..862937 (+) | Length | 159 a.a. |
| NCBI ID | WP_047263814.1 | Uniprot ID | A0A0G3I1G7 |
| Organism | Candidatus Liberibacter africanus strain Zim | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
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Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 862458..885698 | 862458..862937 | within | 0 |
Gene organization within MGE regions
Location: 862458..885698
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V9J15_RS04000 (V9J15_04000) | ssb | 862458..862937 (+) | 480 | WP_047263814.1 | single-stranded DNA-binding protein | Machinery gene |
| V9J15_RS04005 (V9J15_04005) | gyrA | 863104..865797 (+) | 2694 | WP_404990509.1 | DNA gyrase subunit A | - |
| V9J15_RS04010 (V9J15_04010) | - | 866595..866936 (+) | 342 | WP_047263811.1 | hypothetical protein | - |
| V9J15_RS04015 (V9J15_04015) | - | 867500..868417 (-) | 918 | WP_354688015.1 | AAA family ATPase | - |
| V9J15_RS04020 (V9J15_04020) | - | 868469..868771 (-) | 303 | WP_354688016.1 | hypothetical protein | - |
| V9J15_RS04025 (V9J15_04025) | - | 869478..869732 (-) | 255 | WP_047263801.1 | helix-turn-helix domain-containing protein | - |
| V9J15_RS04030 (V9J15_04030) | - | 871525..871896 (+) | 372 | WP_244464400.1 | hypothetical protein | - |
| V9J15_RS04035 (V9J15_04035) | - | 871853..873220 (+) | 1368 | WP_083965928.1 | terminase large subunit domain-containing protein | - |
| V9J15_RS04040 (V9J15_04040) | - | 873400..875331 (+) | 1932 | WP_354688017.1 | phage portal protein | - |
| V9J15_RS04045 (V9J15_04045) | - | 875427..876503 (+) | 1077 | WP_354688018.1 | hypothetical protein | - |
| V9J15_RS04050 (V9J15_04050) | - | 876656..877592 (+) | 937 | Protein_761 | DUF5309 domain-containing protein | - |
| V9J15_RS04055 (V9J15_04055) | - | 877606..877926 (+) | 321 | WP_047263798.1 | hypothetical protein | - |
| V9J15_RS04060 (V9J15_04060) | - | 877926..878501 (+) | 576 | WP_047263797.1 | hypothetical protein | - |
| V9J15_RS04065 (V9J15_04065) | - | 878498..879079 (+) | 582 | WP_047263796.1 | hypothetical protein | - |
| V9J15_RS04070 (V9J15_04070) | - | 879202..879852 (+) | 651 | WP_244464398.1 | hypothetical protein | - |
| V9J15_RS04075 (V9J15_04075) | - | 879779..880858 (+) | 1080 | WP_354688019.1 | hypothetical protein | - |
| V9J15_RS04080 (V9J15_04080) | - | 880873..881340 (+) | 468 | WP_200897311.1 | hypothetical protein | - |
| V9J15_RS04085 (V9J15_04085) | - | 881546..882712 (+) | 1167 | WP_047263793.1 | tail fiber domain-containing protein | - |
| V9J15_RS04090 (V9J15_04090) | - | 882840..883118 (+) | 279 | WP_244464397.1 | hypothetical protein | - |
| V9J15_RS04095 (V9J15_04095) | - | 883181..883906 (+) | 726 | WP_354688020.1 | tail fiber domain-containing protein | - |
| V9J15_RS04100 (V9J15_04100) | - | 884265..884696 (+) | 432 | WP_244464395.1 | hypothetical protein | - |
| V9J15_RS04105 (V9J15_04105) | - | 885051..885698 (+) | 648 | WP_047263792.1 | outer membrane protein | - |
Sequence
Protein
Download Length: 159 a.a. Molecular weight: 18263.28 Da Isoelectric Point: 6.1103
>NTDB_id=943385 V9J15_RS04000 WP_047263814.1 862458..862937(+) (ssb) [Candidatus Liberibacter africanus strain Zim]
MVASVNKVILIGHLGADPDVRHTQDGRKIVNLRIATSESWKDRTTNERREKTEWHSVVVFVEELCKIVEQYLRKGSKVYV
EGSLQTRKWQDQSGNNRYTTEIIMRTMVMLDSRKDSLQGNEHSNNNSNSNLKENVVEDRYSSSQGGSVFSDELDDDIPF
MVASVNKVILIGHLGADPDVRHTQDGRKIVNLRIATSESWKDRTTNERREKTEWHSVVVFVEELCKIVEQYLRKGSKVYV
EGSLQTRKWQDQSGNNRYTTEIIMRTMVMLDSRKDSLQGNEHSNNNSNSNLKENVVEDRYSSSQGGSVFSDELDDDIPF
Nucleotide
Download Length: 480 bp
>NTDB_id=943385 V9J15_RS04000 WP_047263814.1 862458..862937(+) (ssb) [Candidatus Liberibacter africanus strain Zim]
ATGGTAGCAAGTGTCAACAAGGTTATTTTGATAGGACATCTAGGAGCAGATCCAGATGTTAGGCATACGCAAGATGGGCG
TAAAATAGTTAATCTTCGTATTGCTACTTCTGAAAGCTGGAAAGATCGTACTACAAATGAACGTCGTGAAAAAACGGAAT
GGCACTCTGTTGTTGTTTTCGTTGAAGAGCTTTGTAAAATTGTTGAGCAATATCTTCGTAAAGGCTCTAAAGTGTATGTA
GAAGGGTCTCTTCAAACTCGAAAATGGCAAGATCAGTCTGGTAATAATCGTTACACAACTGAGATTATTATGCGTACCAT
GGTTATGTTAGATAGTCGTAAAGATTCCCTGCAAGGAAATGAACATAGTAATAATAATAGTAATAGTAATTTAAAGGAAA
ATGTTGTTGAAGATCGGTATTCGTCTTCGCAAGGAGGGAGTGTGTTCTCTGATGAGCTTGATGATGATATTCCTTTTTAA
ATGGTAGCAAGTGTCAACAAGGTTATTTTGATAGGACATCTAGGAGCAGATCCAGATGTTAGGCATACGCAAGATGGGCG
TAAAATAGTTAATCTTCGTATTGCTACTTCTGAAAGCTGGAAAGATCGTACTACAAATGAACGTCGTGAAAAAACGGAAT
GGCACTCTGTTGTTGTTTTCGTTGAAGAGCTTTGTAAAATTGTTGAGCAATATCTTCGTAAAGGCTCTAAAGTGTATGTA
GAAGGGTCTCTTCAAACTCGAAAATGGCAAGATCAGTCTGGTAATAATCGTTACACAACTGAGATTATTATGCGTACCAT
GGTTATGTTAGATAGTCGTAAAGATTCCCTGCAAGGAAATGAACATAGTAATAATAATAGTAATAGTAATTTAAAGGAAA
ATGTTGTTGAAGATCGGTATTCGTCTTCGCAAGGAGGGAGTGTGTTCTCTGATGAGCTTGATGATGATATTCCTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
45.304 |
100 |
0.516 |
| ssb | Vibrio cholerae strain A1552 |
42.373 |
100 |
0.472 |
| ssb | Neisseria meningitidis MC58 |
35.227 |
100 |
0.39 |
| ssb | Neisseria gonorrhoeae MS11 |
35.227 |
100 |
0.39 |