Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACFIOO_RS07885 Genome accession   NZ_CP170406
Coordinates   1647836..1648522 (-) Length   228 a.a.
NCBI ID   WP_054190082.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t21635     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1642836..1653522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOO_RS07840 rpmA 1643608..1643892 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  ACFIOO_RS07845 - 1643904..1644224 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  ACFIOO_RS07850 rplU 1644230..1644538 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  ACFIOO_RS07855 mreD 1644774..1645304 (-) 531 WP_054190078.1 rod shape-determining protein MreD -
  ACFIOO_RS07860 mreC 1645304..1646146 (-) 843 WP_054190079.1 rod shape-determining protein MreC -
  ACFIOO_RS07865 - 1646344..1646463 (-) 120 WP_054190080.1 hypothetical protein -
  ACFIOO_RS07870 - 1646537..1647010 (-) 474 WP_054190081.1 DUF4930 family protein -
  ACFIOO_RS07875 - 1647170..1647367 (+) 198 WP_000025835.1 hypothetical protein -
  ACFIOO_RS07880 - 1647484..1647768 (-) 285 WP_000171859.1 hypothetical protein -
  ACFIOO_RS07885 ysxA/radC 1647836..1648522 (-) 687 WP_054190082.1 RadC family protein Machinery gene
  ACFIOO_RS07890 - 1648519..1649226 (-) 708 WP_054190083.1 prepilin peptidase -
  ACFIOO_RS07895 - 1649493..1650764 (-) 1272 WP_054190085.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACFIOO_RS07900 - 1650777..1653407 (-) 2631 WP_054190086.1 valine--tRNA ligase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25265.16 Da        Isoelectric Point: 6.4966

>NTDB_id=943373 ACFIOO_RS07885 WP_054190082.1 1647836..1648522(-) (ysxA/radC) [Staphylococcus aureus strain t21635]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNPIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKENCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=943373 ACFIOO_RS07885 WP_054190082.1 1647836..1648522(-) (ysxA/radC) [Staphylococcus aureus strain t21635]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTGATTAACACCGGAAGAAAAGGATTCTCGAGTATTGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAACTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACTTTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGGAGAGCTGAAAATAACCCTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTGAATTCAAAAA
ATGTAGTGATTAAAGAAAACTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGTGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATCGGTGATAATA
GATTTACCAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377