Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   ACFIOQ_RS05790 Genome accession   NZ_CP170404
Coordinates   1116058..1116744 (+) Length   228 a.a.
NCBI ID   WP_000692876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t7960     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1111058..1121744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOQ_RS05775 - 1111172..1113802 (+) 2631 WP_410532234.1 valine--tRNA ligase -
  ACFIOQ_RS05780 - 1113815..1115086 (+) 1272 WP_001108334.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACFIOQ_RS05785 - 1115354..1116061 (+) 708 WP_000261113.1 prepilin peptidase -
  ACFIOQ_RS05790 ysxA/radC 1116058..1116744 (+) 687 WP_000692876.1 RadC family protein Machinery gene
  ACFIOQ_RS05795 - 1116812..1117096 (+) 285 WP_000171863.1 hypothetical protein -
  ACFIOQ_RS05800 - 1117213..1117410 (-) 198 WP_054194364.1 hypothetical protein -
  ACFIOQ_RS05805 - 1117570..1118043 (+) 474 WP_001236737.1 DUF4930 family protein -
  ACFIOQ_RS05810 - 1118117..1118236 (+) 120 WP_000840603.1 hypothetical protein -
  ACFIOQ_RS05815 mreC 1118434..1119276 (+) 843 WP_000911041.1 rod shape-determining protein MreC -
  ACFIOQ_RS05820 mreD 1119276..1119806 (+) 531 WP_031927662.1 rod shape-determining protein MreD -
  ACFIOQ_RS05825 rplU 1120099..1120407 (+) 309 WP_000457386.1 50S ribosomal protein L21 -
  ACFIOQ_RS05830 - 1120413..1120733 (+) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  ACFIOQ_RS05835 rpmA 1120745..1121029 (+) 285 WP_000916187.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25297.21 Da        Isoelectric Point: 6.7572

>NTDB_id=943249 ACFIOQ_RS05790 WP_000692876.1 1116058..1116744(+) (ysxA/radC) [Staphylococcus aureus strain t7960]
MKIKEMVTSEMPRERLLSHGAKSLSNTELLAILINTGRKGFSSIDISNELLKSASNLNELKKSSINDLIQVKGIGLQKAI
TLKAAFELGERMGRRAENNRIKITQPSDVADYMIPTMKDLTQEHFVILLLNSKNVVIKESCVFKGTLNSSIVHPREIFSI
AVRENANAIIAVHNHPSGDVTPSQEDIITTMRLKECGLILGIDLLDHIIIGDNRFTSLVEAGYFDEND

Nucleotide


Download         Length: 687 bp        

>NTDB_id=943249 ACFIOQ_RS05790 WP_000692876.1 1116058..1116744(+) (ysxA/radC) [Staphylococcus aureus strain t7960]
TTGAAAATTAAAGAAATGGTAACTTCAGAAATGCCAAGAGAACGTTTGTTAAGCCATGGTGCAAAAAGTCTTTCGAATAC
AGAATTATTAGCTATATTAATTAACACCGGAAGAAAAGGATTCTCGAGTATAGACATTAGTAATGAACTGCTTAAATCTG
CTTCGAATCTGAATGAATTGAAAAAATCTTCAATTAACGATTTGATACAAGTTAAAGGGATTGGATTACAAAAAGCAATT
ACATTAAAAGCAGCATTTGAGTTAGGGGAAAGGATGGGGAGAAGAGCTGAAAATAATCGTATAAAAATAACGCAACCAAG
TGATGTTGCTGATTATATGATTCCAACAATGAAAGATTTAACACAAGAACATTTTGTCATTTTATTGTTAAATTCAAAAA
ATGTAGTGATTAAAGAAAGCTGTGTTTTTAAAGGTACATTAAATAGTTCGATTGTACATCCACGCGAAATTTTTAGTATT
GCGGTGAGAGAAAATGCCAATGCAATCATCGCAGTTCATAATCATCCATCCGGTGATGTAACGCCCTCACAAGAAGATAT
CATAACAACAATGAGGTTGAAGGAGTGTGGTTTGATTTTAGGGATAGATTTATTGGATCATATTATAATTGGTGATAATA
GATTTACGAGTCTTGTAGAAGCGGGTTACTTTGATGAAAATGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

52.679

98.246

0.518
  radC Streptococcus pneumoniae TIGR4

41.038

92.982

0.382
  radC Streptococcus gordonii str. Challis substr. CH1

39.908

95.614

0.382
  radC Streptococcus pneumoniae R6

40.566

92.982

0.377
  radC Streptococcus pneumoniae D39

40.566

92.982

0.377