Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6L80_RS13085 Genome accession   NZ_CP146504
Coordinates   2608180..2608734 (-) Length   184 a.a.
NCBI ID   WP_062748286.1    Uniprot ID   -
Organism   Erwinia persicina strain ML2-2023-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2603180..2613734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6L80_RS13080 (V6L80_13080) - 2606118..2607842 (-) 1725 WP_137270024.1 ShlB/FhaC/HecB family hemolysin secretion/activation protein -
  V6L80_RS13085 (V6L80_13085) ssb 2608180..2608734 (-) 555 WP_062748286.1 single-stranded DNA-binding protein SSB1 Machinery gene
  V6L80_RS13090 (V6L80_13090) uvrA 2608986..2611814 (+) 2829 WP_062748288.1 excinuclease ABC subunit UvrA -
  V6L80_RS13095 (V6L80_13095) - 2612067..2613119 (+) 1053 WP_062748290.1 NAD(P)-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19545.49 Da        Isoelectric Point: 5.2456

>NTDB_id=942933 V6L80_RS13085 WP_062748286.1 2608180..2608734(-) (ssb) [Erwinia persicina strain ML2-2023-5]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRAQGGGAPAGGGQSGGNNNGWGQPQQPQGGSNNQFSGGAQQSRPQ
QAPQQNSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=942933 V6L80_RS13085 WP_062748286.1 2608180..2608734(-) (ssb) [Erwinia persicina strain ML2-2023-5]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTTTAGTCGGAAATCTGGGTCAGGACCCGGAAGTTCGCTACATGCCGAATGG
CGGTGCCGTTGCCAACATTACTCTGGCGACCTCCGAAAGCTGGCGTGACAAGCAGACCGGTGAAACCAAAGAGAAAACCG
AATGGCACCGTGTTGTGCTGTTCGGCAAGCTGGCCGAAGTGGCGGGCGAATATCTGCGTAAAGGTTCTCAGGTTTACATT
GAAGGCGCACTGCAGACCCGTAAATGGACTGATCAGGCAGGCGTAGAGAAGTACACCACTGAAGTGGTTGTCAACGTCGG
CGGCACCATGCAGATGCTGGGCGGTCGTGCTCAGGGCGGCGGCGCACCAGCGGGCGGCGGTCAGAGCGGTGGCAACAACA
ACGGTTGGGGTCAGCCACAGCAGCCACAGGGCGGCAGCAACAACCAGTTCAGCGGCGGCGCGCAGCAGTCCCGTCCGCAG
CAGGCCCCACAGCAGAACAGTGCACCGGCAAATAACGAACCTCCGATGGACTTCGATGACGATATTCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.34

100

0.739
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.582
  ssb Neisseria gonorrhoeae MS11

45.312

100

0.473
  ssb Neisseria meningitidis MC58

45.312

100

0.473