Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V7R83_RS11625 Genome accession   NZ_CP146288
Coordinates   2831561..2832088 (-) Length   175 a.a.
NCBI ID   WP_005674198.1    Uniprot ID   E7RYT1
Organism   Lautropia mirabilis ATCC 51599     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2826561..2837088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R83_RS11605 (V7R83_11605) aspS 2826877..2828706 (-) 1830 WP_005674194.1 aspartate--tRNA ligase -
  V7R83_RS11610 (V7R83_11610) - 2828840..2829481 (-) 642 WP_040531716.1 DUF502 domain-containing protein -
  V7R83_RS11615 (V7R83_11615) - 2829515..2829865 (-) 351 WP_005674196.1 FmdB family zinc ribbon protein -
  V7R83_RS11620 (V7R83_11620) - 2830081..2831412 (+) 1332 WP_169311692.1 threonine/serine exporter family protein -
  V7R83_RS11625 (V7R83_11625) ssb 2831561..2832088 (-) 528 WP_005674198.1 single-stranded DNA-binding protein Machinery gene
  V7R83_RS11630 (V7R83_11630) - 2832258..2833520 (-) 1263 WP_005674199.1 MFS transporter -
  V7R83_RS11635 (V7R83_11635) uvrA 2833876..2836758 (+) 2883 WP_040531722.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18108.76 Da        Isoelectric Point: 5.3258

>NTDB_id=942565 V7R83_RS11625 WP_005674198.1 2831561..2832088(-) (ssb) [Lautropia mirabilis ATCC 51599]
MASVNKVILVGNLGRDPEVRYTAEGSAITNISVATTSQWKDRNSGERREETEWHRVTFFGRLAEIAGEYLKKGRSVYIEG
RLKTRKYTDANGVEKYATDIIAEQMQMLGGRDGGGDFGGDSGGRSGGYGGGSSGGYGGGASGGGARSGGAAGGGAPAGGN
RPAPTFDDMDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=942565 V7R83_RS11625 WP_005674198.1 2831561..2832088(-) (ssb) [Lautropia mirabilis ATCC 51599]
ATGGCATCCGTCAACAAAGTCATCCTGGTGGGCAATCTGGGCCGCGACCCGGAAGTCCGCTACACGGCCGAGGGTTCGGC
CATCACCAACATCTCGGTGGCTACCACCTCGCAGTGGAAGGACCGCAACTCGGGCGAGCGCCGCGAGGAAACCGAATGGC
ACCGCGTGACCTTCTTTGGCCGCCTGGCCGAGATCGCCGGTGAGTACCTGAAGAAGGGTCGCTCGGTGTACATCGAGGGC
CGCCTGAAGACCCGCAAGTACACCGATGCCAACGGCGTGGAGAAGTACGCTACCGACATCATCGCCGAGCAGATGCAGAT
GCTGGGTGGCCGTGATGGCGGCGGAGACTTCGGCGGCGACAGCGGTGGCCGTTCCGGTGGCTACGGTGGCGGCTCGTCCG
GGGGCTATGGTGGTGGTGCTTCCGGCGGTGGTGCCCGCAGTGGCGGCGCTGCAGGCGGTGGCGCCCCGGCAGGCGGCAAC
CGTCCGGCCCCCACCTTCGACGACATGGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E7RYT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50

100

0.52
  ssb Neisseria gonorrhoeae MS11

49.444

100

0.509
  ssb Neisseria meningitidis MC58

49.444

100

0.509
  ssb Vibrio cholerae strain A1552

45.652

100

0.48