Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6V88_RS26975 Genome accession   NZ_CP146253
Coordinates   5842835..5843353 (-) Length   172 a.a.
NCBI ID   WP_062838810.1    Uniprot ID   -
Organism   Achromobacter sp. E1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5837835..5848353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6V88_RS26950 (V6V88_26950) - 5838098..5839648 (-) 1551 WP_223573660.1 AAA family ATPase -
  V6V88_RS26955 (V6V88_26955) - 5839658..5840233 (-) 576 WP_223573662.1 hypothetical protein -
  V6V88_RS26960 (V6V88_26960) - 5840230..5840418 (-) 189 WP_223573664.1 hypothetical protein -
  V6V88_RS26965 (V6V88_26965) - 5840428..5842140 (-) 1713 WP_223573666.1 hypothetical protein -
  V6V88_RS26970 (V6V88_26970) - 5842153..5842632 (-) 480 WP_223573668.1 hypothetical protein -
  V6V88_RS26975 (V6V88_26975) ssb 5842835..5843353 (-) 519 WP_062838810.1 single-stranded DNA-binding protein Machinery gene
  V6V88_RS26980 (V6V88_26980) - 5843649..5844833 (-) 1185 WP_338617071.1 MFS transporter -
  V6V88_RS26985 (V6V88_26985) uvrA 5845071..5847926 (+) 2856 WP_062838809.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18463.48 Da        Isoelectric Point: 5.9656

>NTDB_id=942366 V6V88_RS26975 WP_062838810.1 5842835..5843353(-) (ssb) [Achromobacter sp. E1]
MASVNKVILVGNLGRDPEVRYSPDGAAICNMSIATTSSWKDKASGEKREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGREDGGGGGGSYGGGGGYDDAPRQQRAAPAQRPAPQQRPAAPAAAPASSG
ANLADMDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=942366 V6V88_RS26975 WP_062838810.1 5842835..5843353(-) (ssb) [Achromobacter sp. E1]
ATGGCATCGGTTAACAAAGTCATACTCGTGGGCAATCTGGGTCGCGACCCGGAAGTCCGCTACAGCCCCGACGGGGCGGC
AATCTGCAACATGTCGATCGCCACGACCTCGTCCTGGAAGGACAAGGCCAGCGGCGAAAAGCGCGAAGAAACCGAATGGC
ACCGCGTCGTCATGTACAACCGCCTGGCTGAAATCGCCGGCGAATACCTGAAGAAAGGCCGTTCGGTCTACATCGAAGGC
CGCCTCAAGACGCGCAAGTGGCAAGACAAGGACACCGGCGCCGACCGCTACAGCACCGAAATCGTCGCTGACCAGATGCA
AATGCTGGGCGGCCGCGAAGACGGCGGCGGCGGTGGCGGCAGCTACGGTGGCGGTGGCGGCTACGACGACGCCCCGCGCC
AGCAACGCGCCGCCCCGGCCCAGCGCCCCGCGCCCCAGCAGCGCCCGGCGGCCCCCGCAGCCGCCCCGGCCAGCAGCGGC
GCCAATCTGGCGGACATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.747

100

0.558
  ssb Glaesserella parasuis strain SC1401

50.802

100

0.552
  ssb Neisseria meningitidis MC58

51.136

100

0.523
  ssb Neisseria gonorrhoeae MS11

51.136

100

0.523