Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6582_RS19220 Genome accession   NZ_CP146242
Coordinates   3602760..3603287 (+) Length   175 a.a.
NCBI ID   WP_070150734.1    Uniprot ID   A0A6A9UBM9
Organism   Agrobacterium vitis strain CG957     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3597760..3608287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6582_RS19205 (V6582_19215) - 3598194..3598649 (-) 456 WP_337739173.1 GNAT family N-acetyltransferase -
  V6582_RS19210 (V6582_19220) - 3598741..3599544 (-) 804 WP_156630690.1 DUF72 domain-containing protein -
  V6582_RS19215 (V6582_19225) uvrA 3599541..3602480 (-) 2940 WP_156630691.1 excinuclease ABC subunit UvrA -
  V6582_RS19220 (V6582_19230) ssb 3602760..3603287 (+) 528 WP_070150734.1 single-stranded DNA-binding protein Machinery gene
  V6582_RS19225 (V6582_19235) - 3603366..3603995 (-) 630 WP_156630692.1 MarC family protein -
  V6582_RS19230 (V6582_19240) gyrA 3604274..3607054 (+) 2781 WP_156630693.1 DNA gyrase subunit A -
  V6582_RS19235 (V6582_19245) - 3607176..3608108 (-) 933 WP_156630694.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18438.20 Da        Isoelectric Point: 5.9492

>NTDB_id=942289 V6582_RS19220 WP_070150734.1 3602760..3603287(+) (ssb) [Agrobacterium vitis strain CG957]
MAGSVNKVILIGNLGADPEIRRTQDGKPIANLRIATSESWRDRNSGERKEKTEWHSVVIFNEGLCKVAEQYLKKGATVYI
EGQLQTRKWQDQNGNDRYSTEIVLQGFNSTLTMLGGRGEGGGAARGGSDFGGGGGGYDDYGSAPARSGGASSGGGRGASA
PSGGFSRDMDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=942289 V6582_RS19220 WP_070150734.1 3602760..3603287(+) (ssb) [Agrobacterium vitis strain CG957]
ATGGCTGGAAGCGTCAACAAGGTTATTTTGATCGGCAATCTGGGCGCGGACCCGGAAATTCGCCGTACCCAGGACGGTAA
GCCGATTGCCAACCTGCGCATCGCCACGTCTGAATCCTGGCGCGACCGGAACTCCGGCGAGCGCAAGGAAAAGACCGAAT
GGCACAGCGTGGTGATTTTCAATGAAGGTCTCTGCAAGGTTGCCGAACAATATCTGAAGAAGGGTGCGACCGTTTATATC
GAGGGCCAGCTTCAGACCCGCAAATGGCAGGACCAGAACGGCAATGACCGTTACTCGACGGAAATCGTCCTCCAGGGCTT
CAACTCGACACTGACCATGCTCGGTGGCCGTGGCGAAGGCGGCGGTGCCGCCCGTGGCGGCAGCGATTTCGGCGGTGGCG
GTGGTGGCTACGACGACTATGGCTCGGCCCCGGCCCGCAGCGGCGGCGCATCCTCGGGCGGTGGTCGCGGCGCCAGCGCG
CCATCGGGCGGTTTCTCCCGCGATATGGACGATGATATACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A9UBM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.445

98.857

0.509
  ssb Glaesserella parasuis strain SC1401

45.596

100

0.503
  ssb Neisseria gonorrhoeae MS11

40.437

100

0.423
  ssb Neisseria meningitidis MC58

40.437

100

0.423