Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6C41_RS04250 Genome accession   NZ_CP146228
Coordinates   948821..949372 (+) Length   183 a.a.
NCBI ID   WP_153508214.1    Uniprot ID   -
Organism   Dickeya sp. CFBP 1272     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 943821..954372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C41_RS04240 (V6C41_04240) - 944846..945264 (-) 419 Protein_815 secondary thiamine-phosphate synthase enzyme YjbQ -
  V6C41_RS04245 uvrA 945753..948585 (-) 2833 Protein_816 excinuclease ABC subunit UvrA -
  V6C41_RS04250 (V6C41_04255) ssb 948821..949372 (+) 552 WP_153508214.1 single-stranded DNA-binding protein Machinery gene
  V6C41_RS04255 (V6C41_04260) - 949459..950034 (-) 576 WP_407321808.1 flavin reductase family protein -
  V6C41_RS04260 (V6C41_04265) - 950087..950716 (-) 630 WP_407321809.1 NAD-dependent dehydratase -
  V6C41_RS04265 (V6C41_04270) - 950715..951395 (+) 681 WP_407321810.1 hypothetical protein -
  V6C41_RS04270 (V6C41_04275) - 951628..952209 (+) 582 WP_102802323.1 DUF4255 domain-containing protein -
  V6C41_RS04275 (V6C41_04280) - 952206..952979 (+) 774 WP_407321811.1 hypothetical protein -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 19595.65 Da        Isoelectric Point: 5.2440

>NTDB_id=942215 V6C41_RS04250 WP_153508214.1 948821..949372(+) (ssb) [Dickeya sp. CFBP 1272]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYTTEVVVDISGSMQMLGGRTGGGAPAAGGNMGGNMGGGNAPQGGWGQPQQPQQANQFSGGGQS
RPQQSAPMPGNEPPMDFDDDIPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=942215 V6C41_RS04250 WP_153508214.1 948821..949372(+) (ssb) [Dickeya sp. CFBP 1272]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACAG
AGTGGCACCGCGTCGCACTCTACGGCAAGCTGGCAGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGTCAGTTGCGTACCCGCAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGCACCGGCGGCGGCGCACCTGCTGCTGGTGGCAACATGGGCGGCAATATGGGTG
GTGGTAACGCGCCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGCGGTCAATCC
CGTCCGCAGCAAAGCGCACCGATGCCGGGCAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

73.797

100

0.754
  ssb Glaesserella parasuis strain SC1401

55.026

100

0.568
  ssb Neisseria meningitidis MC58

45.263

100

0.47
  ssb Neisseria gonorrhoeae MS11

45.263

100

0.47