Detailed information NTG0942203

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: V6P93_RS18385
• Genome accession: NZ_CP146227
• Coordinates: 4163121..4163672 (+)
• Length: 183 a.a.
• NCBI ID: WP_153508214.1
• Uniprot ID: -
• Organism: Dickeya sp. CFBP 1278
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	4163121..4175356	4163121..4163672	within	0

Gene organization within MGE regions

Location: 4163121..4175356

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6P93_RS18385 (V6P93_18390)	ssb	4163121..4163672 (+)	552	WP_153508214.1	single-stranded DNA-binding protein	Machinery gene
V6P93_RS18390 (V6P93_18395)	-	4163759..4164334 (-)	576	WP_407321808.1	flavin reductase family protein	-
V6P93_RS18395 (V6P93_18400)	-	4164387..4165016 (-)	630	WP_407321809.1	NAD-dependent dehydratase	-
V6P93_RS18400 (V6P93_18405)	-	4165015..4165695 (+)	681	WP_407321810.1	hypothetical protein	-
V6P93_RS18405 (V6P93_18410)	-	4165928..4166509 (+)	582	WP_102802323.1	DUF4255 domain-containing protein	-
V6P93_RS18410 (V6P93_18415)	-	4166506..4167315 (+)	810	WP_407345116.1	hypothetical protein	-
V6P93_RS18415 (V6P93_18420)	-	4167454..4169007 (+)	1554	WP_016940536.1	phage tail sheath C-terminal domain-containing protein	-
V6P93_RS18420 (V6P93_18425)	-	4169069..4169539 (+)	471	WP_342699855.1	phage tail protein	-
V6P93_RS18425 (V6P93_18430)	-	4169645..4170103 (+)	459	WP_342699856.1	phage tail protein	-
V6P93_RS18430 (V6P93_18435)	-	4170124..4170324 (+)	201	WP_342699857.1	hypothetical protein	-
V6P93_RS18435 (V6P93_18440)	-	4170339..4170986 (+)	648	WP_342699858.1	peptidoglycan-binding protein	-
V6P93_RS18440 (V6P93_18445)	vgrG	4170999..4172789 (+)	1791	WP_407321812.1	type VI secretion system tip protein VgrG	-
V6P93_RS18445 (V6P93_18450)	-	4173013..4174032 (+)	1020	WP_407321813.1	IS110 family transposase	-
V6P93_RS18450 (V6P93_18455)	-	4174635..4174934 (+)	300	WP_016940542.1	PAAR domain-containing protein	-
V6P93_RS18455 (V6P93_18460)	-	4174937..4175356 (+)	420	WP_342698665.1	GPW/gp25 family protein	-

Sequence

Protein

• Length: 183 a.a.
• Molecular weight: 19595.65 Da
• Isoelectric Point: 5.2440

>NTDB_id=942203 V6P93_RS18385 WP_153508214.1 4163121..4163672(+) (ssb) [Dickeya sp. CFBP 1278]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYTTEVVVDISGSMQMLGGRTGGGAPAAGGNMGGNMGGGNAPQGGWGQPQQPQQANQFSGGGQS
RPQQSAPMPGNEPPMDFDDDIPF

Nucleotide

• Length: 552 bp

>NTDB_id=942203 V6P93_RS18385 WP_153508214.1 4163121..4163672(+) (ssb) [Dickeya sp. CFBP 1278]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACAG
AGTGGCACCGCGTCGCACTCTACGGCAAGCTGGCAGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGTCAGTTGCGTACCCGCAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGCACCGGCGGCGGCGCACCTGCTGCTGGTGGCAACATGGGCGGCAATATGGGTG
GTGGTAACGCGCCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCCAACCAGTTCAGCGGTGGCGGTCAATCC
CGTCCGCAGCAAAGCGCACCGATGCCGGGCAACGAACCGCCGATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	73.797	100	0.754
ssb	Glaesserella parasuis strain SC1401	55.026	100	0.568
ssb	Neisseria meningitidis MC58	45.263	100	0.47
ssb	Neisseria gonorrhoeae MS11	45.263	100	0.47