Detailed information NTG0942178

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: V6C39_RS05865
• Genome accession: NZ_CP146226
• Coordinates: 1293085..1293636 (-)
• Length: 183 a.a.
• NCBI ID: WP_407274021.1
• Uniprot ID: -
• Organism: Dickeya sp. A5611
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1281399..1292120	1293085..1293636	flank	965

Gene organization within MGE regions

Location: 1281399..1293636

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6C39_RS05785 (V6C39_05770)	-	1281399..1281818 (-)	420	WP_407274027.1	GPW/gp25 family protein	-
V6C39_RS05790 (V6C39_05775)	-	1281821..1282120 (-)	300	WP_016940542.1	PAAR domain-containing protein	-
V6C39_RS05795 (V6C39_05780)	-	1282723..1283742 (-)	1020	WP_038914950.1	IS110-like element ISEch3 family transposase	-
V6C39_RS05800 (V6C39_05785)	vgrG	1283966..1285756 (-)	1791	WP_407274026.1	type VI secretion system tip protein VgrG	-
V6C39_RS05805 (V6C39_05790)	-	1285769..1286416 (-)	648	WP_342699858.1	peptidoglycan-binding protein	-
V6C39_RS05810 (V6C39_05795)	-	1286431..1286631 (-)	201	WP_342699857.1	hypothetical protein	-
V6C39_RS05815 (V6C39_05800)	-	1286652..1287110 (-)	459	WP_342699856.1	phage tail protein	-
V6C39_RS05820 (V6C39_05805)	-	1287216..1287542 (-)	327	WP_407274905.1	phage tail protein	-
V6C39_RS05825 (V6C39_05810)	-	1287535..1287687 (-)	153	WP_407274906.1	hypothetical protein	-
V6C39_RS05830 (V6C39_05815)	-	1287749..1289302 (-)	1554	WP_016940536.1	phage tail sheath C-terminal domain-containing protein	-
V6C39_RS05835 (V6C39_05820)	-	1289441..1290250 (-)	810	WP_407274025.1	hypothetical protein	-
V6C39_RS05840 (V6C39_05825)	-	1290247..1290828 (-)	582	WP_407274024.1	DUF4255 domain-containing protein	-
V6C39_RS05845 (V6C39_05830)	-	1291061..1291741 (-)	681	WP_407274907.1	hypothetical protein	-
V6C39_RS05850 (V6C39_05835)	-	1291740..1292120 (+)	381	WP_407274908.1	hypothetical protein	-
V6C39_RS05855 (V6C39_05840)	-	1292122..1292370 (+)	249	WP_407274909.1	hypothetical protein	-
V6C39_RS05860 (V6C39_05845)	-	1292423..1292998 (+)	576	WP_407274022.1	flavin reductase family protein	-
V6C39_RS05865 (V6C39_05850)	ssb	1293085..1293636 (-)	552	WP_407274021.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 183 a.a.
• Molecular weight: 19565.56 Da
• Isoelectric Point: 5.2440

>NTDB_id=942178 V6C39_RS05865 WP_407274021.1 1293085..1293636(-) (ssb) [Dickeya sp. A5611]
MASRGVNKVILIGNLGQDPEVRYMPNGGAVANLTLATSDSWRDKQTGEQKERTEWHRVALYGKLAEIAGEYLRKGSQVYI
EGQLRTRKWQDQSGQDRYTTEVVVDISGSMQMLGGRTGGGAPAAGGNMGGNTGGGNAPQGGWGQPQQPQQANQFSGGGQS
RPQQSAPMPGNEPPMDFDDDIPF

Nucleotide

• Length: 552 bp

>NTDB_id=942178 V6C39_RS05865 WP_407274021.1 1293085..1293636(-) (ssb) [Dickeya sp. A5611]
ATGGCCAGCAGAGGCGTTAACAAAGTGATTCTTATCGGGAATCTGGGTCAGGACCCGGAAGTCCGTTACATGCCGAATGG
CGGCGCAGTCGCTAACCTGACTCTGGCCACGTCGGACAGCTGGCGCGACAAGCAGACCGGCGAGCAGAAAGAGCGTACAG
AGTGGCACCGCGTCGCCCTCTACGGCAAGCTGGCGGAAATCGCCGGTGAGTACCTGCGCAAAGGCTCTCAGGTGTATATC
GAAGGTCAGTTGCGTACCCGCAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACTGAAGTGGTGGTCGATATCTC
CGGCAGCATGCAAATGCTGGGCGGCCGCACCGGCGGCGGCGCACCTGCTGCTGGTGGCAACATGGGCGGCAATACGGGTG
GAGGTAACGCGCCACAAGGTGGTTGGGGTCAACCGCAACAGCCGCAGCAAGCTAACCAGTTCAGCGGTGGCGGTCAATCC
CGTCCGCAGCAAAGCGCGCCGATGCCGGGCAACGAACCACCGATGGATTTTGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	73.797	100	0.754
ssb	Glaesserella parasuis strain SC1401	55.026	100	0.568
ssb	Neisseria meningitidis MC58	45.263	100	0.47
ssb	Neisseria gonorrhoeae MS11	45.263	100	0.47